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Maria Dulcetti Vibranovski

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InstitutionUniversity of Chicago
AddressChicago IL 60637
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Xia S, VanKuren NW, Chen C, Zhang L, Kemkemer C, Shao Y, Jia H, Lee U, Advani AS, Gschwend A, Chen S, Zhang YE, Long M, Vibranovski MD. Genomic analyses of new genes and their phenotypic effects reveal rapid evolution of essential functions in Drosophila development. PLoS Genet. 2021 07; 17(7):e1009654. PMID: 34242211; PMCID: PMC8270118.
      Citations: 8     Fields:    Translation:Animals
    2. Rodrigues MF, Vibranovski MD, Cogni R. Clinal and seasonal changes are correlated in Drosophila melanogaster natural populations. Evolution. 2021 08; 75(8):2042-2054. PMID: 34184262.
      Citations: 2     Fields:    Translation:Animals
    3. Mahadevaraju S, Fear JM, Akeju M, Galletta BJ, Conlon K, Dell'Orso S, Demere Z, Mansuria K, Ross E, Savery M, Yu K, Smith HE, Sartorelli V, Yang H, Rusan NM, Matunis E, Oliver B, Pinheiro MMLS, Avelino CC, Cabral-de-Mello DC, Mendonça CA, Palacios-Gimenez OM, Vibranovski MD. Dynamic sex chromosome expression in Drosophila male germ cells. Nat Commun. 2021 02 09; 12(1):892. PMID: 33563972; PMCID: PMC7873209.
      Citations: 28     Fields:    Translation:AnimalsCells
    4. Samogy-Costa CI, Varella-Branco E, Monfardini F, Ferraz H, Fock RA, Barbosa RHA, Pessoa ALS, Perez ABA, Lourenço N, Vibranovski M, Krepischi A, Rosenberg C, Passos-Bueno MR. A Brazilian cohort of individuals with Phelan-McDermid syndrome: genotype-phenotype correlation and identification of an atypical case. J Neurodev Disord. 2019 07 18; 11(1):13. PMID: 31319798; PMCID: PMC6637483.
      Citations: 15     Fields:    Translation:HumansCells
    5. Raices JB, Otto PA, Vibranovski MD. Haploid selection drives new gene male germline expression. Genome Res. 2019 07; 29(7):1115-1122. PMID: 31221725; PMCID: PMC6633266.
      Citations: 6     Fields:    Translation:AnimalsCells
    6. Moreira de Mello JC, Fernandes GR, Vibranovski MD, Pereira LV. Early X chromosome inactivation during human preimplantation development revealed by single-cell RNA-sequencing. Sci Rep. 2017 09 07; 7(1):10794. PMID: 28883481; PMCID: PMC5589911.
      Citations: 40     Fields:    Translation:Humans
    7. Hinske LC, França GS, Galante PA, Vibranovski MD. Unveiling the Impact of the Genomic Architecture on the Evolution of Vertebrate microRNAs. Front Genet. 2017; 8:34. PMID: 28377786; PMCID: PMC5359303.
      Citations: 9     
    8. França GS, Vibranovski MD, Galante PA. Host gene constraints and genomic context impact the expression and evolution of human microRNAs. Nat Commun. 2016 04 25; 7:11438. PMID: 27109497; PMCID: PMC4848552.
      Citations: 30     Fields:    Translation:HumansAnimals
    9. Vibranovski MD. Meiotic sex chromosome inactivation in Drosophila. J Genomics. 2014; 2:104-17. PMID: 25057326; PMCID: PMC4105432.
      Citations: 20     
    10. VanKuren NW, Vibranovski MD. A novel dataset for identifying sex-biased genes in Drosophila. J Genomics. 2014; 2:64-7. PMID: 25031657; PMCID: PMC4091448.
      Citations: 8     
    11. Gao G, Vibranovski MD, Zhang L, Li Z, Liu M, Zhang YE, Li X, Zhang W, Fan Q, VanKuren NW, Long M, Wei L. A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster. Genome Res. 2014 04; 24(4):629-38. PMID: 24407956; PMCID: PMC3975062.
      Citations: 16     Fields:    Translation:AnimalsCells
    12. Long M, VanKuren NW, Chen S, Vibranovski MD. New gene evolution: little did we know. Annu Rev Genet. 2013; 47:307-33. PMID: 24050177; PMCID: PMC4281893.
      Citations: 121     Fields:    Translation:HumansAnimalsCells
    13. Zhang YE, Landback P, Vibranovski M, Long M. New genes expressed in human brains: implications for annotating evolving genomes. Bioessays. 2012 Nov; 34(11):982-91. PMID: 23001763.
      Citations: 30     Fields:    Translation:HumansAnimals
    14. Vibranovski MD, Zhang YE, Kemkemer C, VanKuren NW, Lopes HF, Karr TL, Long M. Segmental dataset and whole body expression data do not support the hypothesis that non-random movement is an intrinsic property of Drosophila retrogenes. BMC Evol Biol. 2012 Sep 05; 12:169. PMID: 22950647; PMCID: PMC3532075.
      Citations: 1     Fields:    Translation:AnimalsCells
    15. Vibranovski MD, Zhang YE, Kemkemer C, Lopes HF, Karr TL, Long M. Re-analysis of the larval testis data on meiotic sex chromosome inactivation revealed evidence for tissue-specific gene expression related to the drosophila X chromosome. BMC Biol. 2012 Jun 12; 10:49; author reply 50. PMID: 22691264; PMCID: PMC3391172.
      Citations: 23     Fields:    Translation:AnimalsCells
    16. Chen S, Ni X, Krinsky BH, Zhang YE, Vibranovski MD, White KP, Long M. Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene. EMBO J. 2012 Jun 13; 31(12):2798-809. PMID: 22543869; PMCID: PMC3380208.
      Citations: 31     Fields:    Translation:Animals
    17. Wang J, Long M, Vibranovski MD. Retrogenes moved out of the z chromosome in the silkworm. J Mol Evol. 2012 Apr; 74(3-4):113-26. PMID: 22535494.
      Citations: 18     Fields:    Translation:AnimalsCells
    18. Zhang YE, Landback P, Vibranovski MD, Long M. Accelerated recruitment of new brain development genes into the human genome. PLoS Biol. 2011 Oct; 9(10):e1001179. PMID: 22028629; PMCID: PMC3196496.
      Citations: 78     Fields:    Translation:HumansAnimalsCells
    19. Chen M, Zou M, Fu B, Li X, Vibranovski MD, Gan X, Wang D, Wang W, Long M, He S. Evolutionary patterns of RNA-based duplication in non-mammalian chordates. PLoS One. 2011; 6(7):e21466. PMID: 21779328; PMCID: PMC3136929.
      Citations: 7     Fields:    Translation:Animals
    20. Zhang YE, Vibranovski MD, Krinsky BH, Long M. A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes. Bioinformatics. 2011 Jul 01; 27(13):1749-53. PMID: 21551137; PMCID: PMC3117337.
      Citations: 13     Fields:    Translation:HumansAnimalsCells
    21. Chen ZX, Zhang YE, Vibranovski M, Luo J, Gao G, Long M. Deficiency of X-linked inverted duplicates with male-biased expression and the underlying evolutionary mechanisms in the Drosophila genome. Mol Biol Evol. 2011 Oct; 28(10):2823-32. PMID: 21546357; PMCID: PMC3176832.
      Citations: 2     Fields:    Translation:Animals
    22. Zhang YE, Vibranovski MD, Landback P, Marais GA, Long M. Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome. PLoS Biol. 2010 Oct 05; 8(10). PMID: 20957185; PMCID: PMC2950125.
      Citations: 108     Fields:    Translation:HumansAnimalsCells
    23. Zhang YE, Vibranovski MD, Krinsky BH, Long M. Age-dependent chromosomal distribution of male-biased genes in Drosophila. Genome Res. 2010 Nov; 20(11):1526-33. PMID: 20798392; PMCID: PMC2963816.
      Citations: 83     Fields:    Translation:AnimalsCells
    24. Vibranovski MD, Chalopin DS, Lopes HF, Long M, Karr TL. Direct evidence for postmeiotic transcription during Drosophila melanogaster spermatogenesis. Genetics. 2010 Sep; 186(1):431-3. PMID: 20610406; PMCID: PMC2940308.
      Citations: 37     Fields:    Translation:AnimalsCells
    25. Vibranovski MD, Lopes HF, Karr TL, Long M. Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes. PLoS Genet. 2009 Nov; 5(11):e1000731. PMID: 19936020; PMCID: PMC2770318.
      Citations: 122     Fields:    Translation:AnimalsCells
    26. Vibranovski MD, Zhang Y, Long M. General gene movement off the X chromosome in the Drosophila genus. Genome Res. 2009 May; 19(5):897-903. PMID: 19251740; PMCID: PMC2675978.
      Citations: 85     Fields:    Translation:AnimalsCells
    27. Vibranovski MD, Koerich LB, Carvalho AB. Two new Y-linked genes in Drosophila melanogaster. Genetics. 2008 Aug; 179(4):2325-7. PMID: 18660539; PMCID: PMC2516102.
      Citations: 39     Fields:    Translation:AnimalsCells
    28. Havlioglu N, Wang J, Fushimi K, Vibranovski MD, Kan Z, Gish W, Fedorov A, Long M, Wu JY. An intronic signal for alternative splicing in the human genome. PLoS One. 2007 Nov 28; 2(11):e1246. PMID: 18043753; PMCID: PMC2082412.
      Citations: 9     Fields:    Translation:HumansCells
    29. Bettoni F, Vibranovski MD, Lopes MH, Martins WK, Cunha IW, Soares FA, Simpson AJ, de Souza SJ, Camargo AA, Parmigiani RB. Characterization of a cancer/testis (CT) antigen gene family capable of eliciting humoral response in cancer patients. Proc Natl Acad Sci U S A. 2006 Nov 28; 103(48):18066-71. PMID: 17114284; PMCID: PMC1838707.
      Citations: 11     Fields:    Translation:HumansAnimalsCells
    30. Sakabe NJ, Vibranovski MD, de Souza SJ. A possible role of exon-shuffling in the evolution of signal peptides of human proteins. FEBS Lett. 2006 Mar 06; 580(6):1621-4. PMID: 16487520.
      Citations: 5     Fields:    Translation:HumansCells
    31. Sakabe NJ, de Oliveira RS, Vibranovski MD, de Souza SJ. Signs of ancient and modern exon-shuffling are correlated to the distribution of ancient and modern domains along proteins. J Mol Evol. 2005 Sep; 61(3):341-50. PMID: 16034650.
      Citations: 12     Fields:    Translation:Cells
    32. Vibranovski MD, Sakabe NJ, de Souza SJ. A bioinformatics analysis of alternative exon usage in human genes coding for extracellular matrix proteins. Genet Mol Res. 2004 Dec 30; 3(4):532-44. PMID: 15688319.
      Citations: 4     Fields:    Translation:HumansCells
    33. Vibranovski MD, Carlson JW, Celniker SE, Hoskins RA, Rubin GM, Sutton GG, Adams MD, Myers EW, Clark AG, Carvalho AB. Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go? Genetica. 2003 Mar; 117(2-3):227-37. PMID: 12723702.
      Citations: 30     Fields:    Translation:AnimalsCells
    34. Carvalho AB, Dobo BA, Vibranovski MD, Clark AG, Carvalho AB, Dobo BA, Vibranovski MD, Clark AG. Identification of five new genes on the Y chromosome of Drosophila melanogaster. Proc Natl Acad Sci U S A. 2001 Nov 06; 98(23):13225-30. PMID: 11687639; PMCID: PMC60852.
      Citations: 91     Fields:    Translation:AnimalsCells
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