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Maria Dulcetti Vibranovski

AddressChicago IL 60637
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Xia S, VanKuren NW, Chen C, Zhang L, Kemkemer C, Shao Y, Jia H, Lee U, Advani AS, Gschwend A, Vibranovski MD, Chen S, Zhang YE, Long M. Genomic analyses of new genes and their phenotypic effects reveal rapid evolution of essential functions in Drosophila development. PLoS Genet. 2021 Jul; 17(7):e1009654. PMID: 34242211.
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    2. Rodrigues MF, Vibranovski MD, Cogni R. Clinal and seasonal changes are correlated in Drosophila melanogaster natural populations. Evolution. 2021 Aug; 75(8):2042-2054. PMID: 34184262.
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    3. Mahadevaraju S, Fear JM, Akeju M, Galletta BJ, Pinheiro MMLS, Avelino CC, Cabral-de-Mello DC, Conlon K, Dell'Orso S, Demere Z, Mansuria K, Mendonça CA, Palacios-Gimenez OM, Ross E, Savery M, Yu K, Smith HE, Sartorelli V, Yang H, Rusan NM, Vibranovski MD, Matunis E, Oliver B. Dynamic sex chromosome expression in Drosophila male germ cells. Nat Commun. 2021 02 09; 12(1):892. PMID: 33563972.
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    4. Samogy-Costa CI, Varella-Branco E, Monfardini F, Ferraz H, Fock RA, Barbosa RHA, Pessoa ALS, Perez ABA, Lourenço N, Vibranovski M, Krepischi A, Rosenberg C, Passos-Bueno MR. A Brazilian cohort of individuals with Phelan-McDermid syndrome: genotype-phenotype correlation and identification of an atypical case. J Neurodev Disord. 2019 07 18; 11(1):13. PMID: 31319798.
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    5. Raices JB, Otto PA, Vibranovski MD. Haploid selection drives new gene male germline expression. Genome Res. 2019 07; 29(7):1115-1122. PMID: 31221725.
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    6. Moreira de Mello JC, Fernandes GR, Vibranovski MD, Pereira LV. Early X chromosome inactivation during human preimplantation development revealed by single-cell RNA-sequencing. Sci Rep. 2017 09 07; 7(1):10794. PMID: 28883481.
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    7. França GS, Hinske LC, Galante PA, Vibranovski MD. Unveiling the Impact of the Genomic Architecture on the Evolution of Vertebrate microRNAs. Front Genet. 2017; 8:34. PMID: 28377786.
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    8. França GS, Vibranovski MD, Galante PA. Host gene constraints and genomic context impact the expression and evolution of human microRNAs. Nat Commun. 2016 04 25; 7:11438. PMID: 27109497.
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    9. Vibranovski MD. Meiotic sex chromosome inactivation in Drosophila. J Genomics. 2014; 2:104-17. PMID: 25057326.
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    10. VanKuren NW, Vibranovski MD. A novel dataset for identifying sex-biased genes in Drosophila. J Genomics. 2014; 2:64-7. PMID: 25031657.
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    11. Gao G, Vibranovski MD, Zhang L, Li Z, Liu M, Zhang YE, Li X, Zhang W, Fan Q, VanKuren NW, Long M, Wei L. A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster. Genome Res. 2014 04; 24(4):629-38. PMID: 24407956.
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    12. Long M, VanKuren NW, Chen S, Vibranovski MD. New gene evolution: little did we know. Annu Rev Genet. 2013; 47:307-33. PMID: 24050177.
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    13. Zhang YE, Landback P, Vibranovski M, Long M. New genes expressed in human brains: implications for annotating evolving genomes. Bioessays. 2012 Nov; 34(11):982-91. PMID: 23001763.
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    14. Vibranovski MD, Zhang YE, Kemkemer C, VanKuren NW, Lopes HF, Karr TL, Long M. Segmental dataset and whole body expression data do not support the hypothesis that non-random movement is an intrinsic property of Drosophila retrogenes. BMC Evol Biol. 2012 Sep 05; 12:169. PMID: 22950647.
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    15. Vibranovski MD, Zhang YE, Kemkemer C, Lopes HF, Karr TL, Long M. Re-analysis of the larval testis data on meiotic sex chromosome inactivation revealed evidence for tissue-specific gene expression related to the drosophila X chromosome. BMC Biol. 2012 Jun 12; 10:49; author reply 50. PMID: 22691264.
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    16. Chen S, Ni X, Krinsky BH, Zhang YE, Vibranovski MD, White KP, Long M. Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene. EMBO J. 2012 Jun 13; 31(12):2798-809. PMID: 22543869.
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    17. Wang J, Long M, Vibranovski MD. Retrogenes moved out of the z chromosome in the silkworm. J Mol Evol. 2012 Apr; 74(3-4):113-26. PMID: 22535494.
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    18. Zhang YE, Landback P, Vibranovski MD, Long M. Accelerated recruitment of new brain development genes into the human genome. PLoS Biol. 2011 Oct; 9(10):e1001179. PMID: 22028629.
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    19. Chen M, Zou M, Fu B, Li X, Vibranovski MD, Gan X, Wang D, Wang W, Long M, He S. Evolutionary patterns of RNA-based duplication in non-mammalian chordates. PLoS One. 2011; 6(7):e21466. PMID: 21779328.
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    20. Zhang YE, Vibranovski MD, Krinsky BH, Long M. A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes. Bioinformatics. 2011 Jul 01; 27(13):1749-53. PMID: 21551137.
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    21. Chen ZX, Zhang YE, Vibranovski M, Luo J, Gao G, Long M. Deficiency of X-linked inverted duplicates with male-biased expression and the underlying evolutionary mechanisms in the Drosophila genome. Mol Biol Evol. 2011 Oct; 28(10):2823-32. PMID: 21546357.
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    22. Zhang YE, Vibranovski MD, Landback P, Marais GA, Long M. Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome. PLoS Biol. 2010 Oct 05; 8(10). PMID: 20957185.
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    23. Zhang YE, Vibranovski MD, Krinsky BH, Long M. Age-dependent chromosomal distribution of male-biased genes in Drosophila. Genome Res. 2010 Nov; 20(11):1526-33. PMID: 20798392.
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    24. Vibranovski MD, Chalopin DS, Lopes HF, Long M, Karr TL. Direct evidence for postmeiotic transcription during Drosophila melanogaster spermatogenesis. Genetics. 2010 Sep; 186(1):431-3. PMID: 20610406.
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    25. Vibranovski MD, Lopes HF, Karr TL, Long M. Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes. PLoS Genet. 2009 Nov; 5(11):e1000731. PMID: 19936020.
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    26. Vibranovski MD, Zhang Y, Long M. General gene movement off the X chromosome in the Drosophila genus. Genome Res. 2009 May; 19(5):897-903. PMID: 19251740.
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    27. Vibranovski MD, Koerich LB, Carvalho AB. Two new Y-linked genes in Drosophila melanogaster. Genetics. 2008 Aug; 179(4):2325-7. PMID: 18660539.
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    28. Havlioglu N, Wang J, Fushimi K, Vibranovski MD, Kan Z, Gish W, Fedorov A, Long M, Wu JY. An intronic signal for alternative splicing in the human genome. PLoS One. 2007 Nov 28; 2(11):e1246. PMID: 18043753.
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    29. Parmigiani RB, Bettoni F, Vibranovski MD, Lopes MH, Martins WK, Cunha IW, Soares FA, Simpson AJ, de Souza SJ, Camargo AA. Characterization of a cancer/testis (CT) antigen gene family capable of eliciting humoral response in cancer patients. Proc Natl Acad Sci U S A. 2006 Nov 28; 103(48):18066-71. PMID: 17114284.
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    30. Vibranovski MD, Sakabe NJ, de Souza SJ. A possible role of exon-shuffling in the evolution of signal peptides of human proteins. FEBS Lett. 2006 Mar 06; 580(6):1621-4. PMID: 16487520.
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    31. Vibranovski MD, Sakabe NJ, de Oliveira RS, de Souza SJ. Signs of ancient and modern exon-shuffling are correlated to the distribution of ancient and modern domains along proteins. J Mol Evol. 2005 Sep; 61(3):341-50. PMID: 16034650.
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    32. Sakabe NJ, Vibranovski MD, de Souza SJ. A bioinformatics analysis of alternative exon usage in human genes coding for extracellular matrix proteins. Genet Mol Res. 2004 Dec 30; 3(4):532-44. PMID: 15688319.
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    33. Carvalho AB, Vibranovski MD, Carlson JW, Celniker SE, Hoskins RA, Rubin GM, Sutton GG, Adams MD, Myers EW, Clark AG. Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go? Genetica. 2003 Mar; 117(2-3):227-37. PMID: 12723702.
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    34. Carvalho AB, Dobo BA, Vibranovski MD, Clark AG. Identification of five new genes on the Y chromosome of Drosophila melanogaster. Proc Natl Acad Sci U S A. 2001 Nov 06; 98(23):13225-30. PMID: 11687639.
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