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Elena K. Davydova

AddressChicago IL 60637
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Binas O, Tants JN, Peter SA, Janowski R, Davydova E, Braun J, Niessing D, Schwalbe H, Weigand JE, Schlundt A. Structural basis for the recognition of transiently structured AU-rich elements by Roquin. Nucleic Acids Res. 2020 07 27; 48(13):7385-7403. PMID: 32491174.
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    2. Slezak T, Bailey LJ, Jaskolowski M, Nahotko DA, Filippova EV, Davydova EK, Kossiakoff AA. An engineered ultra-high affinity Fab-Protein G pair enables a modular antibody platform with multifunctional capability. Protein Sci. 2020 01; 29(1):141-156. PMID: 31622515.
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    3. Radwanska MJ, Jask├│lowski M, Davydova E, Derewenda U, Miyake T, Engel DA, Kossiakoff AA, Derewenda ZS. The structure of the C-terminal domain of the nucleoprotein from the Bundibugyo strain of the Ebola virus in complex with a pan-specific synthetic Fab. Acta Crystallogr D Struct Biol. 2018 07 01; 74(Pt 7):681-689. PMID: 29968677.
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    4. Rehage N, Davydova E, Conrad C, Behrens G, Maiser A, Stehklein JE, Brenner S, Klein J, Jeridi A, Hoffmann A, Lee E, Dianzani U, Willemsen R, Feederle R, Reiche K, Hackerm├╝ller J, Leonhardt H, Sharma S, Niessing D, Heissmeyer V. Binding of NUFIP2 to Roquin promotes recognition and regulation of ICOS mRNA. Nat Commun. 2018 01 19; 9(1):299. PMID: 29352114.
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    5. Shen F, Sun B, Kreutz JE, Davydova EK, Du W, Reddy PL, Joseph LJ, Ismagilov RF. Multiplexed quantification of nucleic acids with large dynamic range using multivolume digital RT-PCR on a rotational SlipChip tested with HIV and hepatitis C viral load. J Am Chem Soc. 2011 Nov 09; 133(44):17705-12. PMID: 21995644.
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    6. Shen F, Davydova EK, Du W, Kreutz JE, Piepenburg O, Ismagilov RF. Digital isothermal quantification of nucleic acids via simultaneous chemical initiation of recombinase polymerase amplification reactions on SlipChip. Anal Chem. 2011 May 01; 83(9):3533-40. PMID: 21476587.
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    7. Gleghorn ML, Davydova EK, Basu R, Rothman-Denes LB, Murakami KS. X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides. Proc Natl Acad Sci U S A. 2011 Mar 01; 108(9):3566-71. PMID: 21321236.
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    8. Shen F, Du W, Davydova EK, Karymov MA, Pandey J, Ismagilov RF. Nanoliter multiplex PCR arrays on a SlipChip. Anal Chem. 2010 Jun 01; 82(11):4606-12. PMID: 20446698.
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    9. Gleghorn ML, Davydova EK, Rothman-Denes LB, Murakami KS. Structural basis for DNA-hairpin promoter recognition by the bacteriophage N4 virion RNA polymerase. Mol Cell. 2008 Dec 05; 32(5):707-17. PMID: 19061645.
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    10. Davydova EK, Kaganman I, Kazmierczak KM, Rothman-Denes LB. Identification of bacteriophage N4 virion RNA polymerase-nucleic acid interactions in transcription complexes. J Biol Chem. 2009 Jan 23; 284(4):1962-70. PMID: 19015264.
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    11. Murakami KS, Davydova EK, Rothman-Denes LB. X-ray crystal structure of the polymerase domain of the bacteriophage N4 virion RNA polymerase. Proc Natl Acad Sci U S A. 2008 Apr 01; 105(13):5046-51. PMID: 18362338.
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    12. Davydova EK, Santangelo TJ, Rothman-Denes LB. Bacteriophage N4 virion RNA polymerase interaction with its promoter DNA hairpin. Proc Natl Acad Sci U S A. 2007 Apr 24; 104(17):7033-8. PMID: 17438270.
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    13. Davydova EK, Rothman-Denes LB. Escherichia coli single-stranded DNA-binding protein mediates template recycling during transcription by bacteriophage N4 virion RNA polymerase. Proc Natl Acad Sci U S A. 2003 Aug 05; 100(16):9250-5. PMID: 12876194.
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    14. Davydova EK, Kazmierczak KM, Rothman-Denes LB. Bacteriophage N4-coded, virion-encapsulated DNA-dependent RNA polymerase. Methods Enzymol. 2003; 370:83-94. PMID: 14712636.
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    15. Kazmierczak KM, Davydova EK, Mustaev AA, Rothman-Denes LB. The phage N4 virion RNA polymerase catalytic domain is related to single-subunit RNA polymerases. EMBO J. 2002 Nov 01; 21(21):5815-23. PMID: 12411499.
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    16. Evdokimova VM, Kovrigina EA, Nashchekin DV, Davydova EK, Hershey JW, Ovchinnikov LP. The major core protein of messenger ribonucleoprotein particles (p50) promotes initiation of protein biosynthesis in vitro. J Biol Chem. 1998 Feb 06; 273(6):3574-81. PMID: 9452484.
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    17. Rothman-Denes LB, Dai X, Davydova E, Carter R, Kazmierczak K. Transcriptional regulation by DNA structural transitions and single-stranded DNA-binding proteins. Cold Spring Harb Symp Quant Biol. 1998; 63:63-73. PMID: 10384271.
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    18. Davydova EK, Evdokimova VM, Ovchinnikov LP, Hershey JW. Overexpression in COS cells of p50, the major core protein associated with mRNA, results in translation inhibition. Nucleic Acids Res. 1997 Jul 15; 25(14):2911-6. PMID: 9207042.
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    19. Davydova EK, Malinin NL, Ovchinnikov LP. Ribosomes terminated in vitro are in a tight association with non-phosphorylated elongation factor 2 (eEF-2) and GDP. Eur J Biochem. 1993 Jul 15; 215(2):291-6. PMID: 8344297.
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    20. Davydova EK, Ovchinnikov LP. ADP-ribosylated elongation factor 2 (ADP-ribosyl-EF-2) is unable to promote translocation within the ribosome. FEBS Lett. 1990 Feb 26; 261(2):350-2. PMID: 2311763.
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    21. Sitikov AS, Davydova EK, Bezlepkina TA, Ovchinnikov LP, Spirin AS. Eukaryotic elongation factor 2 loses its non-specific affinity for RNA and leaves polyribosomes as a result of ADP-ribosylation. FEBS Lett. 1984 Oct 29; 176(2):406-10. PMID: 6208057.
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    22. Davydova EK, Sitikov AS, Ovchinnikov LP. Phosphorylation of elongation factor 1 in polyribosome fraction of rabbit reticulocytes. FEBS Lett. 1984 Oct 29; 176(2):401-5. PMID: 6489525.
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    23. Sitikov AS, Davydova EK, Ovchinnikov LP. Endogenous ADP-ribosylation of elongation factor 2 in polyribosome fraction of rabbit reticulocytes. FEBS Lett. 1984 Oct 15; 176(1):261-3. PMID: 6092136.
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