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Joshua Weinstein

TitleAssistant Professor
InstitutionUniversity of Chicago
DepartmentMedicine-Genetic Medicine
AddressChicago IL 60637
Email
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    Joshua Weinstein is a biophysicist and molecular technologist. He works on developing DNA-based technologies for high-throughput encoding and decoding of biological information with a view toward applications in biology and medicine. He has previously worked on applying massively parallel DNA sequencing to the study of immune receptor repertoires. Recently, he invented DNA microscopy, an imaging modality that uses DNA rather than light as an imaging medium in order to generate detailed pictures of how genetic diversity distributes spatially across biological specimens.
    Prof. Weinsten completed his undergraduate studies in physics and biophysics at the University of Pennsylvania, and his PhD in biophysics at Stanford University in 2012 under the direction of Stephen Quake and Daniel Fisher. There, he published the first global measurements of immune receptor sequence repertoires, using the zebrafish as a model organism. Weinstein later applied repertoire-sequencing to immune development and human vaccine response.
    Weinsten completed his postdoctoral work at the Broad Institute/Massachusetts Institute of Technology, under the joint-mentorship of Feng Zhang and Aviv Regev, where he was supported by a Simons Fellowship from the Life Sciences Research Foundation. There, he developed DNA microscopy, enabling biological specimens to “image themselves” and thereby generating detailed spatio-genetic data sets, which bypass the need for specialized equipment. In 2019, Weinstein moved to his current position as assistant professor of molecular engineering and medicine in the section of genetic medicine at the University of Chicago.

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Qian N, Weinstein JA. Spatial transcriptomic imaging of an intact organism using volumetric DNA microscopy. Nat Biotechnol. 2025 Mar 27. PMID: 40148595.
      Citations:    Fields:    
    2. Weinstein J. Refining the lens of DNA microscopy. Nat Comput Sci. 2024 Feb; 4(2):94-95. PMID: 38365998.
      Citations: 1     Fields:    
    3. Qian N, Weinstein JA. Volumetric imaging of an intact organism by a distributed molecular network. bioRxiv. 2023 Aug 14. PMID: 37645933; PMCID: PMC10462061.
      Citations:    
    4. Weinstein JA, Regev A, Zhang F. DNA Microscopy: Optics-free Spatio-genetic Imaging by a Stand-Alone Chemical Reaction. Cell. 2019 06 27; 178(1):229-241.e16. PMID: 31230717; PMCID: PMC6697087.
      Citations: 52     Fields:    Translation:HumansCells
    5. Vollmers C, Sit RV, Weinstein JA, Dekker CL, Quake SR. Genetic measurement of memory B-cell recall using antibody repertoire sequencing. Proc Natl Acad Sci U S A. 2013 Aug 13; 110(33):13463-8. PMID: 23898164; PMCID: PMC3746854.
      Citations: 136     Fields:    Translation:HumansCells
    6. Hsu PD, Scott DA, Weinstein JA, Ran FA, Konermann S, Agarwala V, Li Y, Fine EJ, Wu X, Shalem O, Cradick TJ, Marraffini LA, Bao G, Zhang F. DNA targeting specificity of RNA-guided Cas9 nucleases. Nat Biotechnol. 2013 Sep; 31(9):827-32. PMID: 23873081; PMCID: PMC3969858.
      Citations: 2509     Fields:    Translation:Cells
    7. Weinstein JA, Zeng X, Chien YH, Quake SR. Correlation of gene expression and genome mutation in single B-cells. PLoS One. 2013; 8(6):e67624. PMID: 23840752; PMCID: PMC3695916.
      Citations: 10     Fields:    Translation:AnimalsCells
    8. Jiang N, He J, Weinstein JA, Penland L, Sasaki S, He XS, Dekker CL, Zheng NY, Huang M, Sullivan M, Wilson PC, Greenberg HB, Davis MM, Fisher DS, Quake SR. Lineage structure of the human antibody repertoire in response to influenza vaccination. Sci Transl Med. 2013 Feb 06; 5(171):171ra19. PMID: 23390249; PMCID: PMC3699344.
      Citations: 209     Fields:    Translation:HumansPHPublic Health
    9. Jiang N, Weinstein JA, Penland L, White RA, Fisher DS, Quake SR. Determinism and stochasticity during maturation of the zebrafish antibody repertoire. Proc Natl Acad Sci U S A. 2011 Mar 29; 108(13):5348-53. PMID: 21393572; PMCID: PMC3069157.
      Citations: 60     Fields:    Translation:AnimalsCells
    10. Weinstein JA, Jiang N, White RA, Fisher DS, Quake SR. High-throughput sequencing of the zebrafish antibody repertoire. Science. 2009 May 08; 324(5928):807-10. PMID: 19423829; PMCID: PMC3086368.
      Citations: 232     Fields:    Translation:AnimalsCells
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