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Yamuna Krishnan

TitleProfessor
InstitutionUniversity of Chicago
DepartmentChemistry
AddressChicago IL 60637
Email
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    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Boškovic F, Dutta Gupta P, Zhang J, Krishnan Y, Szostak JW. A nucleic acid labeling chemistry reveals surface DNA on exosomes. Proc Natl Acad Sci U S A. 2026 Jul 07; 123(27):e2532281123. PMID: 42372149; PMCID: PMC13343009.
      Citations:    Fields:    Translation:HumansAnimalsCells
    2. Mitra K, Kim S, Oettinger D, Uthishtran S, Zhao Q, Veetil AT, Ramirez JR, Lin H, Arumugam S, Krishnan Y. A ratiometric fluorescent reporter of mitochondrial sodium. Nat Chem Biol. 2026 Aug; 22(8):1320-1329. PMID: 42332021; PMCID: PMC13430436.
      Citations:    Fields:    Translation:HumansCells
    3. Chen L, Henn D, Dong Z, Liang J, Wielenga A, Vale G, Burugula B, Zou J, Krishnan Y, McDonald JG, Kitzman J, Li M. Peroxisome-derived ether lipids regulate lysosomal exocytosis. EMBO J. 2026 Jun; 45(11):3699-3730. PMID: 42069866; PMCID: PMC13226661.
      Citations:    Fields:    Translation:HumansAnimalsCells
    4. Lee S, Chakraborty S, Kim S, Ali A, Mitra K, Zajac M, Brown A, Pincus D, Krishnan Y. Organelles harbour pH gradients. Res Sq. 2026 Jan 20. PMID: 41646419; PMCID: PMC12869580.
      Citations:    
    5. Lee S, Chakraborty S, Kim S, Ali A, Mitra K, Zajac M, Brown A, Pincus D, Krishnan Y. Organelles harbour pH gradients. bioRxiv. 2025 Dec 16. PMID: 41446184; PMCID: PMC12724592.
      Citations:    
    6. Kumar S, Jung HA, Walker G, Rana JK, Fu R, H?ng MT, Malerba F, Kumar J, Navratna V, Jung W, Miller SJ, Kruckenhauser L, Capsoni S, Hafler BP, Cattaneo A, Krishnan Y, Mosalaganti S, Bhattacharyya M. A painless nerve growth factor variant uncouples nociceptive and neurotrophic TrkA signaling. bioRxiv. 2025 Dec 12. PMID: 41332679; PMCID: PMC12667935.
      Citations:    
    7. Boskovic F, Gupta PD, Zhang J, Krishnan Y, Szostak JW. A nucleic acid labeling chemistry reveals surface DNA on exosomes. bioRxiv. 2025 Nov 19. PMID: 41332572; PMCID: PMC12667867.
      Citations:    
    8. Shah M, Kirthivasan N, Chakraborty S, Krishnan Y, Jhunjhunwala S. Phagosome Maturation in Macrophages is Enhanced by p38a MAPK Signaling. Small. 2025 11; 21(44):e06883. PMID: 40968501.
      Citations:    Fields:    Translation:AnimalsCells
    9. Shah M, Kirthivasan N, Chakraborty S, Krishnan Y, Jhunjhunwala S. Phagosome Maturation in Macrophages is Enhanced by p38a MAPK Signaling. bioRxiv. 2025 Jul 06. PMID: 40631207; PMCID: PMC12236480.
      Citations:    
    10. Serulla M, Anees P, Hallaj A, Trofimenko E, Kalia T, Krishnan Y, Widmann C. Corrigendum to "Plasma membrane depolarization reveals endosomal escape incapacity of cell-penetrating peptides" [Eur. J. Pharm. Biopharm. 184 (2023) 13949]. Eur J Pharm Biopharm. 2025 May; 210:114694. PMID: 40102076.
      Citations:    Fields:    
    11. Alkhalaf LM, Arrowsmith C, Balskus EP, Bergamini G, Bhandari R, Chang CJ, Chen P, Chen X, Ciulli A, Cricco JA, Davis BG, Delbianco M, Dudareva N, Dueber E, Ferguson F, de Giuseppe PO, Hamachi I, Hammond MC, Hatzios SK, Do Heo W, Janet JP, Kamat SS, Knapp S, Krishnan Y, Lang K, Laraia L, Leveson-Gower RB, Li XD, Liu DR, Liu MF, London N, Mahanta N, Mayor-Ruiz C, Muir T, Murakami MT, Rhee HW, Robers M, Satz A, Schulman BA, Shen B, Shoichet B, Strauss E, Suzuki T, Tiwary P, Waldmann H, Ward TR, Weeks A, Weerapana E, Winter G. Thoughts for the future. Nat Chem Biol. 2025 Jan; 21(1):6-15. PMID: 39719500.
      Citations:    Fields:    
    12. Deivasigamani S, Thekkan S, Vergara HM, Conolly O, Cosden M, Phan T, Smith S, Marcus J, Uslaner J, Venkat D, Drolet RE, Krishnan Y, Modi S. Multimodal Blood-Based Biomarker Panel Reveals Altered Lysosomal Ionic Content in Alzheimer's Disease. ACS Chem Biol. 2025 01 17; 20(1):137-152. PMID: 39699875.
      Citations: 1     Fields:    Translation:HumansCells
    13. Levin-Konigsberg R, Mitra K, Spees K, Nigam A, Liu K, Januel C, Hivare P, Arana SM, Prolo LM, Kundaje A, Leonetti MD, Krishnan Y, Bassik MC. An SLC12A9-dependent ion transport mechanism maintains lysosomal osmolarity. Dev Cell. 2025 01 20; 60(2):220-235.e7. PMID: 39476838.
      Citations: 5     Fields:    Translation:HumansAnimalsCells
    14. Tinker J, Anees P, Krishnan Y. Quantitative Chemical Imaging of Organelles. Acc Chem Res. 2024 07 16; 57(14):1906-1917. PMID: 38916405; PMCID: PMC12211986.
      Citations: 5     Fields:    Translation:HumansAnimalsCells
    15. Zajac M, Mukherjee S, Anees P, Oettinger D, Henn K, Srikumar J, Zou J, Saminathan A, Krishnan Y. A mechanism of lysosomal calcium entry. Sci Adv. 2024 02 16; 10(7):eadk2317. PMID: 38354239; PMCID: PMC10866540.
      Citations: 16     Fields:    Translation:HumansAnimalsCells
    16. Mitra K, Krishnan Y. Lightly counting membrane proteins in native nanodiscs. Nat Nanotechnol. 2024 01; 19(1):5-6. PMID: 38012272.
      Citations:    Fields:    
    17. Rodriguez R, Krishnan Y. The chemistry of next-generation sequencing. Nat Biotechnol. 2023 12; 41(12):1709-1715. PMID: 37845570; PMCID: PMC10999191.
      Citations: 26     Fields:    Translation:Cells
    18. Anees P, Saminathan A, Rozmus ER, Di A, Malik AB, Delisle BP, Krishnan Y. Detecting organelle-specific activity of potassium channels with a DNA nanodevice. Nat Biotechnol. 2024 Jul; 42(7):1065-1074. PMID: 37735264; PMCID: PMC11021130.
      Citations: 16     Fields:    Translation:HumansCells
    19. Zou J, Mitra K, Anees P, Oettinger D, Ramirez JR, Veetil AT, Gupta PD, Rao R, Smith JJ, Kratsios P, Krishnan Y. A DNA nanodevice for mapping sodium at single-organelle resolution. Nat Biotechnol. 2024 Jul; 42(7):1075-1083. PMID: 37735265; PMCID: PMC11004682.
      Citations: 13     Fields:    Translation:HumansAnimalsCells
    20. Zhang SJ, Lowe LA, Anees P, Krishnan Y, Fai TG, Szostak JW, Wang A. Passive endocytosis in model protocells. Proc Natl Acad Sci U S A. 2023 06 13; 120(24):e2221064120. PMID: 37276401; PMCID: PMC10268330.
      Citations: 6     Fields:    Translation:Cells
    21. Levin-Konigsberg R, Mitra K, Nigam A, Spees K, Hivare P, Liu K, Kundaje A, Krishnan Y, Bassik MC. SLC12A9 is a lysosome-detoxifying ammonium - chloride co-transporter. bioRxiv. 2023 May 22. PMID: 37292735; PMCID: PMC10245881.
      Citations: 2     
    22. Huang LS, Anas M, Xu J, Zhou B, Toth PT, Krishnan Y, Di A, Malik AB. Endosomal trafficking of two-pore K+ efflux channel TWIK2 to plasmalemma mediates NLRP3 inflammasome activation and inflammatory injury. Elife. 2023 05 09; 12. PMID: 37158595; PMCID: PMC10202452.
      Citations: 20     Fields:    Translation:AnimalsCells
    23. Zhang SJ, Lowe LA, Anees P, Krishnan Y, Fai TG, Szostak JW, Wang A. Passive endocytosis in model protocells. bioRxiv. 2023 May 04. PMID: 37205531; PMCID: PMC10187163.
      Citations:    
    24. Serulla M, Anees P, Hallaj A, Trofimenko E, Kalia T, Krishnan Y, Widmann C. Plasma membrane depolarization reveals endosomal escape incapacity of cell-penetrating peptides. Eur J Pharm Biopharm. 2023 Mar; 184:116-124. PMID: 36709921.
      Citations: 11     Fields:    Translation:Cells
    25. Zajac M, Modi S, Krishnan Y. The evolution of organellar calcium mapping technologies. Cell Calcium. 2022 12; 108:102658. PMID: 36274564; PMCID: PMC10224794.
      Citations: 7     Fields:    Translation:Cells
    26. Cui C, Chakraborty K, Tang XA, Schoenfelt KQ, Hoffman A, Blank A, McBeth B, Pulliam N, Reardon CA, Kulkarni SA, Vaisar T, Ballabio A, Krishnan Y, Becker L. A lysosome-targeted DNA nanodevice selectively targets macrophages to attenuate tumours. Nat Nanotechnol. 2021 12; 16(12):1394-1402. PMID: 34764452.
      Citations: 45     Fields:    Translation:HumansAnimalsCells
    27. Suresh B, Saminathan A, Chakraborty K, Zajac M, Cui C, Becker L, Krishnan Y. Tubular lysosomes harbor active ion gradients and poise macrophages for phagocytosis. Proc Natl Acad Sci U S A. 2021 10 12; 118(41). PMID: 34607961; PMCID: PMC8522270.
      Citations: 21     Fields:    Translation:HumansAnimalsCells
    28. Nachtergaele S, Krishnan Y. New Vistas for Cell-Surface GlycoRNAs. N Engl J Med. 2021 Aug 12; 385(7):658-660. PMID: 34379930.
      Citations: 13     Fields:    Translation:HumansCells
    29. Chakraborty K, Anees P, Surana S, Martin S, Aburas J, Moutel S, Perez F, Koushika SP, Kratsios P, Krishnan Y. Tissue-specific targeting of DNA nanodevices in a multicellular living organism. Elife. 2021 07 28; 10. PMID: 34318748; PMCID: PMC8360651.
      Citations: 7     Fields:    Translation:Animals
    30. Osei-Owusu J, Yang J, Leung KH, Ruan Z, Krishnan Y, Qiu Z, Lü W. Proton-activated chloride channel PAC regulates endosomal acidification and transferrin receptor-mediated endocytosis. Cell Rep. 2021 01 26; 34(4):108683. PMID: 33503418; PMCID: PMC7869721.
      Citations: 44     Fields:    Translation:HumansCells
    31. Anees P, Zajac M, Krishnan Y. Quantifying phagosomal HOCl at single immune-cell resolution. Methods Cell Biol. 2021; 164:119-136. PMID: 34225911; PMCID: PMC11026105.
      Citations:    Fields:    Translation:Cells
    32. Saminathan A, Devany J, Veetil AT, Suresh B, Pillai KS, Schwake M, Krishnan Y. A DNA-based voltmeter for organelles. Nat Nanotechnol. 2021 01; 16(1):96-103. PMID: 33139937; PMCID: PMC8513801.
      Citations: 59     Fields:    Translation:HumansAnimalsCells
    33. Krishnan Y, Zou J, Jani MS. Quantitative Imaging of Biochemistry in Situ and at the Nanoscale. ACS Cent Sci. 2020 Nov 25; 6(11):1938-1954. PMID: 33274271; PMCID: PMC7706076.
      Citations: 10     
    34. Veetil AT, Zou J, Henderson KW, Jani MS, Shaik SM, Sisodia SS, Hale ME, Krishnan Y. DNA-based fluorescent probes of NOS2 activity in live brains. Proc Natl Acad Sci U S A. 2020 06 30; 117(26):14694-14702. PMID: 32554491; PMCID: PMC7334527.
      Citations: 18     Fields:    Translation:AnimalsCells
    35. Jani MS, Veetil AT, Krishnan Y. Controlled release of bioactive signaling molecules. Methods Enzymol. 2020; 638:129-138. PMID: 32416910.
      Citations:    Fields:    Translation:Cells
    36. Jani MS, Zou J, Veetil AT, Krishnan Y. A DNA-based fluorescent probe maps NOS3 activity with subcellular spatial resolution. Nat Chem Biol. 2020 06; 16(6):660-666. PMID: 32152543.
      Citations: 22     Fields:    Translation:HumansCells
    37. Saminathan A, Noyola VS, Krishnan Y. Chemically Resolving Lysosome Populations in Live Cells. Trends Biochem Sci. 2020 04; 45(4):365-366. PMID: 32169175.
      Citations: 5     Fields:    Translation:HumansAnimalsCells
    38. Zajac M, Chakraborty K, Mahadevan V, Infield DT, Accardi A, Qiu Z, Krishnan Y, Saha S. What biologists want from their chloride reporters - a conversation between chemists and biologists. J Cell Sci. 2020 01 23; 133(2). PMID: 31974277.
      Citations: 20     Fields:    Translation:Humans
    39. Sayresmith NA, Saminathan A, Sailer JK, Patberg SM, Sandor K, Krishnan Y, Walter MG. Correction to "Photostable Voltage-Sensitive Dyes Based on Simple, Solvatofluorochromic, Asymmetric Thiazolothiazoles". J Am Chem Soc. 2020 Jan 29; 142(4):2083. PMID: 31939296.
      Citations:    Fields:    
    40. Sayresmith NA, Saminathan A, Sailer JK, Patberg SM, Sandor K, Krishnan Y, Walter MG. Photostable Voltage-Sensitive Dyes Based on Simple, Solvatofluorochromic, Asymmetric Thiazolothiazoles. J Am Chem Soc. 2019 11 27; 141(47):18780-18790. PMID: 31660737.
      Citations: 21     Fields:    
    41. Sharma S, Zajac M, Krishnan Y. A DNA Aptamer for Cyclic Adenosine Monophosphate that Shows Adaptive Recognition. Chembiochem. 2020 01 15; 21(1-2):157-162. PMID: 31099939; PMCID: PMC6960355.
      Citations: 3     Fields:    Translation:Cells
    42. Leung K, Krishnan Y. Dynamic RNA Nanotechnology Enters the CRISPR Toolbox. ACS Cent Sci. 2019 Jul 24; 5(7):1111-1113. PMID: 31404241; PMCID: PMC6662155.
      Citations: 2     
    43. Krishnan Y, Seeman NC. Introduction: Nucleic Acid Nanotechnology. Chem Rev. 2019 05 22; 119(10):6271-6272. PMID: 31117417.
      Citations: 12     Fields:    Translation:Cells
    44. Dan K, Veetil AT, Chakraborty K, Krishnan Y. DNA nanodevices map enzymatic activity in organelles. Nat Nanotechnol. 2019 03; 14(3):252-259. PMID: 30742135; PMCID: PMC6859052.
      Citations: 28     Fields:    Translation:HumansAnimalsCells
    45. Prakash V, Tsekouras K, Venkatachalapathy M, Heinicke L, Walter NG, Krishnan Y, Pressé S. Quantitative Mapping of Endosomal DNA Processing by Single Molecule Counting. Angew Chem Int Ed Engl. 2019 03 04; 58(10):3073-3076. PMID: 30667589.
      Citations: 7     Fields:    Translation:AnimalsCells
    46. Narayanaswamy N, Chakraborty K, Saminathan A, Zeichner E, Leung K, Devany J, Krishnan Y. Author Correction: A pH-correctable, DNA-based fluorescent reporter for organellar calcium. Nat Methods. 2019 Feb; 16(2):205. PMID: 30643216.
      Citations: 2     Fields:    
    47. Thekkan S, Jani MS, Cui C, Dan K, Zhou G, Becker L, Krishnan Y. A DNA-based fluorescent reporter maps HOCl production in the maturing phagosome. Nat Chem Biol. 2019 12; 15(12):1165-1172. PMID: 30531966; PMCID: PMC7034416.
      Citations: 23     Fields:    Translation:Cells
    48. Narayanaswamy N, Chakraborty K, Saminathan A, Zeichner E, Leung K, Devany J, Krishnan Y. A pH-correctable, DNA-based fluorescent reporter for organellar calcium. Nat Methods. 2019 01; 16(1):95-102. PMID: 30532082; PMCID: PMC7107693.
      Citations: 54     Fields:    Translation:AnimalsCells
    49. Leung K, Chakraborty K, Saminathan A, Krishnan Y. A DNA nanomachine chemically resolves lysosomes in live cells. Nat Nanotechnol. 2019 02; 14(2):176-183. PMID: 30510277; PMCID: PMC6859053.
      Citations: 74     Fields:    Translation:HumansAnimalsCells
    50. Salgado EN, Garcia Rodriguez B, Narayanaswamy N, Krishnan Y, Harrison SC. Visualization of Calcium Ion Loss from Rotavirus during Cell Entry. J Virol. 2018 12 15; 92(24). PMID: 30258012; PMCID: PMC6258952.
      Citations: 21     Fields:    Translation:AnimalsCells
    51. Veetil AT, Jani MS, Krishnan Y. Chemical control over membrane-initiated steroid signaling with a DNA nanocapsule. Proc Natl Acad Sci U S A. 2018 09 18; 115(38):9432-9437. PMID: 29531078; PMCID: PMC6156627.
      Citations: 8     Fields:    Translation:HumansCells
    52. Devany J, Chakraborty K, Krishnan Y. Subcellular Nanorheology Reveals Lysosomal Viscosity as a Reporter for Lysosomal Storage Diseases. Nano Lett. 2018 02 14; 18(2):1351-1359. PMID: 29313356.
      Citations: 10     Fields:    Translation:HumansAnimalsCells
    53. Pons T, Bhatia D, Valades-Cruz CA, Johannes L, Krishnan Y, Dubertret B, Banerjee A, Grazon C. A novel type of quantum dot-transferrin conjugate using DNA hybridization mimics intracellular recycling of endogenous transferrin. Nanoscale. 2017 Oct 19; 9(40):15453-15460. PMID: 28976518.
      Citations: 4     Fields:    Translation:AnimalsCells
    54. Chakraborty S, Krishnan Y. A structural map of oncomiR-1 at single-nucleotide resolution. Nucleic Acids Res. 2017 Sep 19; 45(16):9694-9705. PMID: 28934477; PMCID: PMC5766152.
      Citations: 10     Fields:    Translation:HumansCells
    55. Veetil AT, Chakraborty K, Xiao K, Minter MR, Sisodia SS, Krishnan Y. Cell-targetable DNA nanocapsules for spatiotemporal release of caged bioactive small molecules. Nat Nanotechnol. 2017 12; 12(12):1183-1189. PMID: 28825714.
      Citations: 37     Fields:    Translation:AnimalsCells
    56. Chakraborty K, Leung K, Krishnan Y. High lumenal chloride in the lysosome is critical for lysosome function. Elife. 2017 07 25; 6. PMID: 28742019; PMCID: PMC5526669.
      Citations: 68     Fields:    Translation:HumansAnimalsCells
    57. Patel A, Malinovska L, Saha S, Wang J, Alberti S, Krishnan Y, Hyman AA. ATP as a biological hydrotrope. Science. 2017 05 19; 356(6339):753-756. PMID: 28522535.
      Citations: 429     Fields:    Translation:Cells
    58. Joshi H, Bhatia D, Krishnan Y, Maiti PK. Probing the structure and in silico stability of cargo loaded DNA icosahedra using MD simulations. Nanoscale. 2017 Mar 30; 9(13):4467-4477. PMID: 28304019.
      Citations: 4     Fields:    Translation:Cells
    59. Joshi H, Prakash V, Nadal B, Maiti PK, Krishnan Y, Bhatia D, Arumugam S, Nasilowski M, Wunder C, Chambon V, Grazon C, Johannes L, Dubertret B. Quantum dot-loaded monofunctionalized DNA icosahedra for single-particle tracking of endocytic pathways. Nat Nanotechnol. 2016 12; 11(12):1112-1119. PMID: 27548358; PMCID: PMC5122452.
      Citations: 37     Fields:    Translation:AnimalsCells
    60. Chakraborty K, Veetil AT, Jaffrey SR, Krishnan Y. Nucleic Acid-Based Nanodevices in Biological Imaging. Annu Rev Biochem. 2016 Jun 02; 85:349-73. PMID: 27294440; PMCID: PMC5522603.
      Citations: 55     Fields:    Translation:AnimalsCells
    61. Amit I, Baker D, Barker R, Berger B, Bertozzi C, Bhatia S, Biffi A, Demichelis F, Doudna J, Dowdy SF, Endy D, Helmstaedter M, Junca H, June C, Kamb S, Khvorova A, Kim DH, Kim JS, Krishnan Y, Lakadamyali M, Lappalainen T, Lewin S, Liao J, Loman N, Lundberg E, Lynd L, Martin C, Mellman I, Miyawaki A, Mummery C, Nelson K, Paz J, Peralta-Yahya P, Picotti P, Polyak K, Prather K, Qin J, Quake S, Regev A, Rogers JA, Shetty R, Stevens M, Stolovitzky G, Takahashi M, Tang F, Teichmann S, Tripathi L, Vemula P, Verdine G, Vollmer F, Wang J, Ying JY, Zhang F, Sommer M, Torres-Padilla ME, Zhang T. Voices of biotech. Nat Biotechnol. 2016 Mar; 34(3):270-5. PMID: 26963549.
      Citations: 2     Fields:    Translation:Humans
    62. Prakash V, Saha S, Chakraborty K, Krishnan Y. Rational design of a quantitative, pH-insensitive, nucleic acid based fluorescent chloride reporter. Chem Sci. 2016 Mar 01; 7(3):1946-1953. PMID: 30050672; PMCID: PMC6042475.
      Citations: 9     
    63. Surana S, Shenoy AR, Krishnan Y. Designing DNA nanodevices for compatibility with the immune system of higher organisms. Nat Nanotechnol. 2015 Sep; 10(9):741-7. PMID: 26329110; PMCID: PMC4862568.
      Citations: 81     Fields:    Translation:HumansAnimalsCells
    64. Banerjee A, Grazon C, Nadal B, Pons T, Krishnan Y, Dubertret B. Fast, Efficient, and Stable Conjugation of Multiple DNA Strands on Colloidal Quantum Dots. Bioconjug Chem. 2015 Aug 19; 26(8):1582-9. PMID: 25992903.
      Citations: 10     Fields:    
    65. Lannes L, Halder S, Krishnan Y, Schwalbe H. Tuning the pH Response of i-Motif DNA Oligonucleotides. Chembiochem. 2015 Jul 27; 16(11):1647-56. PMID: 26032298.
      Citations: 30     Fields:    Translation:HumansCells
    66. Saha S, Prakash V, Halder S, Chakraborty K, Krishnan Y. A pH-independent DNA nanodevice for quantifying chloride transport in organelles of living cells. Nat Nanotechnol. 2015 Jul; 10(7):645-51. PMID: 26098226.
      Citations: 82     Fields:    Translation:AnimalsCells
    67. Halder S, Krishnan Y. Design of ultrasensitive DNA-based fluorescent pH sensitive nanodevices. Nanoscale. 2015 Jun 14; 7(22):10008-12. PMID: 25990365.
      Citations: 9     Fields:    
    68. Sharma S, Zaveri A, Visweswariah SS, Krishnan Y. A fluorescent nucleic acid nanodevice quantitatively images elevated cyclic adenosine monophosphate in membrane-bound compartments. Small. 2014 Nov 12; 10(21):4276-80. PMID: 25044725.
      Citations: 10     Fields:    Translation:Cells
    69. Ghosh A, Krishnan Y. At a long-awaited turning point. Nat Nanotechnol. 2014 Jul; 9(7):491-4. PMID: 24990209.
      Citations: 3     Fields:    
    70. Chakraborty S, Mehtab S, Krishnan Y. The predictive power of synthetic nucleic acid technologies in RNA biology. Acc Chem Res. 2014 Jun 17; 47(6):1710-9. PMID: 24712860.
      Citations: 6     Fields:    Translation:HumansAnimalsCells
    71. Modi S, Halder S, Krishnan Y, Nizak C. Recombinant antibody mediated delivery of organelle-specific DNA pH sensors along endocytic pathways. Nanoscale. 2014 Jan 21; 6(2):1144-52. PMID: 24297098.
      Citations: 11     Fields:    Translation:HumansCells
    72. Ganesh KN, Krishnan Y. Nucleic acids--chemistry and applications. J Org Chem. 2013 Dec 20; 78(24):12283-7. PMID: 24354734.
      Citations: 3     Fields:    
    73. Ganesh KN, Krishnan Y. Nucleic acids--chemistry and applications. Org Lett. 2013 Dec 20; 15(24):6115. PMID: 24354722.
      Citations:    Fields:    
    74. Banerjee A, Bhatia D, Saminathan A, Chakraborty S, Kar S, Krishnan Y. Controlled release of encapsulated cargo from a DNA icosahedron using a chemical trigger. Angew Chem Int Ed Engl. 2013 Jul 01; 52(27):6854-7. PMID: 23716499.
      Citations: 35     Fields:    
    75. Modi S, Surana S, Halder S, Krishnan Y, Nizak C. Two DNA nanomachines map pH changes along intersecting endocytic pathways inside the same cell. Nat Nanotechnol. 2013 Jun; 8(6):459-67. PMID: 23708428.
      Citations: 88     Fields:    Translation:HumansCells
    76. Surana S, Bhatia D, Krishnan Y. A method to study in vivo stability of DNA nanostructures. Methods. 2013 Nov; 64(1):94-100. PMID: 23623822; PMCID: PMC3820032.
      Citations: 24     Fields:    Translation:Animals
    77. Surana S, Krishnan Y. A method to map spatiotemporal pH changes in a multicellular living organism using a DNA nanosensor. Methods Mol Biol. 2013; 991:9-23. PMID: 23546654.
      Citations: 1     Fields:    Translation:AnimalsCells
    78. Bhatia D, Chakraborty S, Mehtab S, Krishnan Y. A method to encapsulate molecular cargo within DNA icosahedra. Methods Mol Biol. 2013; 991:65-80. PMID: 23546660.
      Citations: 1     Fields:    Translation:Cells
    79. Krishnan Y, Bathe M. Designer nucleic acids to probe and program the cell. Trends Cell Biol. 2012 Dec; 22(12):624-33. PMID: 23140833.
      Citations: 33     Fields:    Translation:Cells
    80. Bhatia D, Chakraborty S, Krishnan Y. Gene delivery: Designer DNA give RNAi more spine. Nat Nanotechnol. 2012 Jun 03; 7(6):344-6. PMID: 22659610.
      Citations: 1     Fields:    Translation:Animals
    81. Chakraborty S, Mehtab S, Patwardhan A, Krishnan Y. Pri-miR-17-92a transcript folds into a tertiary structure and autoregulates its processing. RNA. 2012 May; 18(5):1014-28. PMID: 22450760; PMCID: PMC3334689.
      Citations: 39     Fields:    Translation:HumansCells
    82. Saha S, Chakraborty K, Krishnan Y. Tunable, colorimetric DNA-based pH sensors mediated by A-motif formation. Chem Commun (Camb). 2012 Mar 04; 48(19):2513-5. PMID: 22278189.
      Citations: 6     Fields:    Translation:Cells
    83. Bhatia D, Sharma S, Krishnan Y. Synthetic, biofunctional nucleic acid-based molecular devices. Curr Opin Biotechnol. 2011 Aug; 22(4):475-84. PMID: 21652202.
      Citations: 6     Fields:    Translation:HumansAnimalsCells
    84. Surana S, Bhat JM, Koushika SP, Krishnan Y. An autonomous DNA nanomachine maps spatiotemporal pH changes in a multicellular living organism. Nat Commun. 2011 Jun 07; 2:340. PMID: 21654640.
      Citations: 71     Fields:    Translation:AnimalsCells
    85. Bhatia D, Surana S, Chakraborty S, Koushika SP, Krishnan Y. A synthetic icosahedral DNA-based host-cargo complex for functional in vivo imaging. Nat Commun. 2011 Jun 07; 2:339. PMID: 21654639.
      Citations: 64     Fields:    Translation:AnimalsCells
    86. Krishnan Y, Simmel FC. Nucleic acid based molecular devices. Angew Chem Int Ed Engl. 2011 Mar 28; 50(14):3124-56. PMID: 21432950.
      Citations: 111     Fields:    Translation:Cells
    87. Modi S, Krishnan Y. A method to map spatiotemporal pH changes inside living cells using a pH-triggered DNA nanoswitch. Methods Mol Biol. 2011; 749:61-77. PMID: 21674365.
      Citations: 1     Fields:    Translation:AnimalsCells
    88. Saha S, Bhatia D, Krishnan Y. pH-Toggled DNA architectures: reversible assembly of three-way junctions into extended 1D architectures through A-motif formation. Small. 2010 Jun 21; 6(12):1288-92. PMID: 20486230.
      Citations: 2     Fields:    
    89. Modi S, M G S, Goswami D, Gupta GD, Mayor S, Krishnan Y. A DNA nanomachine that maps spatial and temporal pH changes inside living cells. Nat Nanotechnol. 2009 May; 4(5):325-30. PMID: 19421220.
      Citations: 191     Fields:    Translation:HumansAnimalsCells
    90. Chakraborty S, Sharma S, Maiti PK, Krishnan Y. The poly dA helix: a new structural motif for high performance DNA-based molecular switches. Nucleic Acids Res. 2009 May; 37(9):2810-7. PMID: 19279188; PMCID: PMC2685084.
      Citations: 23     Fields:    Translation:Cells
    91. Bhatia D, Mehtab S, Krishnan R, Indi SS, Basu A, Krishnan Y. Icosahedral DNA nanocapsules by modular assembly. Angew Chem Int Ed Engl. 2009; 48(23):4134-7. PMID: 19222079.
      Citations: 40     Fields:    Translation:Cells
    92. Chakraborty S, Krishnan Y. Kinetic hybrid i-motifs: intercepting DNA with RNA to form a DNA(2)-RNA(2) i-motif. Biochimie. 2008 Jul; 90(7):1088-95. PMID: 18358847.
      Citations: 2     Fields:    Translation:Cells
    93. Chakraborty S, Modi S, Krishnan Y. The RNA2-PNA2 hybrid i-motif-a novel RNA-based building block. Chem Commun (Camb). 2008 Jan 07; (1):70-2. PMID: 18401893.
      Citations: 3     Fields:    Translation:Cells
    94. Sengupta P, Krishnan Y, Ladame S, Paul A. Combining G-quadruplex targeting motifs on a single peptide nucleic acid scaffold: a hybrid (3+1) PNA-DNA bimolecular quadruplex. Chemistry. 2008; 14(28):8682-9. PMID: 18668497.
      Citations: 16     Fields:    Translation:Cells
    95. Ghodke HB, Krishnan R, Vignesh K, Kumar GV, Narayana C, Krishnan Y. The I-tetraplex building block: rational design and controlled fabrication of robust 1D DNA scaffolds through non-Watson-Crick interactions. Angew Chem Int Ed Engl. 2007; 46(15):2646-9. PMID: 17330917.
      Citations: 13     Fields:    Translation:Cells
    96. Pitchiaya S, Krishnan Y. First blueprint, now bricks: DNA as construction material on the nanoscale. Chem Soc Rev. 2006 Nov; 35(11):1111-21. PMID: 17057840.
      Citations: 10     Fields:    Translation:Cells
    97. Modi S, Wani AH, Krishnan Y. The PNA-DNA hybrid I-motif: implications for sugar-sugar contacts in i-motif tetramerization. Nucleic Acids Res. 2006; 34(16):4354-63. PMID: 16936319; PMCID: PMC1636347.
      Citations: 8     Fields:    Translation:Cells
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