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Rong Shen

TitlePost Doctoral Scholar
InstitutionUniversity of Chicago
DepartmentBiochemistry and Molecular Biology
AddressChicago IL 60637
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Ecker BL, Seier K, Choubey A, Eckhoff AM, Tortorello GN, Balachandran VP, Blackburn N, D'Angelica MI, Deek MP, DeMatteo RP, Blazer DG, Drebin JA, Fisher WE, Gill AJ, Gingras MC, Jabbour SK, Kingham TP, Lee MK, Lidsky ME, Nussbaum DP, Overman MJ, Samra JL, Shen R, Sigel CS, Vollmer CM, Wei AC, Zani S, Roses RE, Gonen M, Jarnagin WR, Australian Pancreatic Genome Initiative (APGI). Recurrence Patterns of Resected Ampullary Adenocarcinoma and Implications for Multimodal Therapy: A Hidden Genome-Derived Analysis from the Ampullary Cancer Collaborative. Ann Surg Oncol. 2026 Sep 18. PMID: 42758445.
      Citations:    
    2. Lodwick JE, Shen R, Erramilli S, Xie Y, Roganowicz K, Ritchey S, Kossiakoff AA, Zhao M. Structural insights into the roles of PARP4 and NAD+ binding in the human vault cage. Nat Commun. 2025 Jul 21; 16(1):6724. PMID: 40691181; PMCID: PMC12280208.
      Citations: 4     Fields:    Translation:HumansCells
    3. Contreras GF, Shen R, Latorre R, Perozo E. Structural basis of voltage-dependent gating in BK channels. Nat Commun. 2025 Jul 01; 16(1):5846. PMID: 40593533; PMCID: PMC12218146.
      Citations: 1     Fields:    Translation:AnimalsCells
    4. Guo SC, Shen R, Roux B, Dinner AR. Dynamics of activation in the voltage-sensing domain of Ciona intestinalis phosphatase Ci-VSP. Nat Commun. 2024 02 15; 15(1):1408. PMID: 38360718; PMCID: PMC10869754.
      Citations: 7     Fields:    Translation:AnimalsCells
    5. Shen R, Roux B, Perozo E. Anionic omega currents from single countercharge mutants in the voltage-sensing domain of Ci-VSP. J Gen Physiol. 2024 01 01; 156(1). PMID: 38019193; PMCID: PMC10686229.
      Citations: 3     Fields:    Translation:Animals
    6. Shen R, Meng Y, Perozo E, Roux B. Mechanism of voltage gating in the voltage-sensing phosphatase Ci-VSP. Proc Natl Acad Sci U S A. 2022 11; 119(44):e2206649119. PMID: 36279472; PMCID: PMC9636939.
      Citations: 13     Fields:    Translation:Cells
    7. Sun X, Nguyen T, Achour A, Ko A, Cifello J, Ling C, Sharma J, Hiroi T, Zhang Y, Chia CW, Wood W, Wu WW, Zukley L, Phue JN, Becker KG, Shen RF, Ferrucci L, Weng NP. Longitudinal analysis reveals age-related changes in the T cell receptor repertoire of human T cell subsets. J Clin Invest. 2022 09 01; 132(17). PMID: 35708913; PMCID: PMC9433102.
      Citations: 56     Fields:    Translation:HumansCells
    8. Mascia F, Mazo I, Alterovitz WL, Karagiannis K, Wu WW, Shen RF, Beaver JA, Rao VA. In search of autophagy biomarkers in breast cancer: Receptor status and drug agnostic transcriptional changes during autophagy flux in cell lines. PLoS One. 2022; 17(1):e0262134. PMID: 34990474; PMCID: PMC8735604.
      Citations: 11     Fields:    Translation:HumansCells
    9. Bavi N, Clark MD, Contreras GF, Shen R, Reddy BG, Milewski W, Perozo E. The conformational cycle of prestin underlies outer-hair cell electromotility. Nature. 2021 12; 600(7889):553-558. PMID: 34695838.
      Citations: 47     Fields:    Translation:AnimalsCells
    10. Li J, Shen R, Rohaim A, Mendoza Uriarte R, Fajer M, Perozo E, Roux B. Computational study of non-conductive selectivity filter conformations and C-type inactivation in a voltage-dependent potassium channel. J Gen Physiol. 2021 09 06; 153(9). PMID: 34357375; PMCID: PMC8352720.
      Citations: 11     Fields:    Translation:Cells
    11. Clark MD, Contreras GF, Shen R, Perozo E. Electromechanical coupling in the hyperpolarization-activated K+ channel KAT1. Nature. 2020 07; 583(7814):145-149. PMID: 32461693; PMCID: PMC7747229.
      Citations: 45     Fields:    Translation:AnimalsCells
    12. Cohen JE, Wang R, Shen RF, Wu WW, Keller JE. Comparative pathogenomics of Clostridium tetani. PLoS One. 2017; 12(8):e0182909. PMID: 28800585; PMCID: PMC5553647.
      Citations: 25     Fields:    Translation:Cells
    13. Dang B, Shen R, Kubota T, Mandal K, Bezanilla F, Roux B, Kent SB. Inversion of the Side-Chain Stereochemistry of Indvidual Thr or Ile Residues in a Protein Molecule: Impact on the Folding, Stability, and Structure of the ShK Toxin. Angew Chem Int Ed Engl. 2017 03 13; 56(12):3324-3328. PMID: 28194851; PMCID: PMC5507063.
      Citations: 5     Fields:    Translation:Cells
    14. Shen R, Han W, Fiorin G, Islam SM, Schulten K, Roux B. Structural Refinement of Proteins by Restrained Molecular Dynamics Simulations with Non-interacting Molecular Fragments. PLoS Comput Biol. 2015 Oct; 11(10):e1004368. PMID: 26505197; PMCID: PMC4624691.
      Citations: 14     Fields:    Translation:Cells
    15. Li Q, Shen R, Treger JS, Wanderling SS, Milewski W, Siwowska K, Bezanilla F, Perozo E. Resting state of the human proton channel dimer in a lipid bilayer. Proc Natl Acad Sci U S A. 2015 Nov 03; 112(44):E5926-35. PMID: 26443860; PMCID: PMC4640771.
      Citations: 50     Fields:    Translation:HumansCells
    16. Shen R, Mo Q, Schultz N, Seshan VE, Olshen AB, Huse J, Ladanyi M, Sander C. Integrative subtype discovery in glioblastoma using iCluster. PLoS One. 2012; 7(4):e35236. PMID: 22539962; PMCID: PMC3335101.
      Citations: 120     Fields:    Translation:HumansCells
    17. Mankoo PK, Shen R, Schultz N, Levine DA, Sander C. Time to recurrence and survival in serous ovarian tumors predicted from integrated genomic profiles. PLoS One. 2011; 6(11):e24709. PMID: 22073136; PMCID: PMC3207809.
      Citations: 51     Fields:    Translation:HumansCells
    18. Kunin M, Dmitrieva NI, Gallazzini M, Shen RF, Wang G, Burg MB, Ferraris JD. Mediator of DNA damage checkpoint 1 (MDC1) contributes to high NaCl-induced activation of the osmoprotective transcription factor TonEBP/OREBP. PLoS One. 2010 Aug 11; 5(8):e12108. PMID: 20711462; PMCID: PMC2920327.
      Citations: 7     Fields:    Translation:HumansCells
    19. Gong Y, Yao E, Shen R, Goel A, Arcila M, Teruya-Feldstein J, Zakowski MF, Frankel S, Peifer M, Thomas RK, Ladanyi M, Pao W. High expression levels of total IGF-1R and sensitivity of NSCLC cells in vitro to an anti-IGF-1R antibody (R1507). PLoS One. 2009 Oct 06; 4(10):e7273. PMID: 19806209; PMCID: PMC2752171.
      Citations: 71     Fields:    Translation:HumansCells
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