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Wanwen Zeng

TitleAssistant Professor
InstitutionUniversity of Chicago
DepartmentPublic Health Sciences
AddressChicago IL 60637
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Zeng W, Guo H, Liu Q, Wong WH. Improving polygenic prediction from whole-genome sequencing data by leveraging predicted epigenomic features. Proc Natl Acad Sci U S A. 2025 Jun 17; 122(24):e2419202122. PMID: 40504151; PMCID: PMC12184400.
      Citations: 1     Fields:    Translation:Humans
    2. Cui X, Yin Q, Gao Z, Li Z, Chen X, Lv H, Chen S, Liu Q, Zeng W, Jiang R. CREATE: cell-type-specific cis-regulatory element identification via discrete embedding. Nat Commun. 2025 May 17; 16(1):4607. PMID: 40382355; PMCID: PMC12085597.
      Citations: 2     Fields:    Translation:HumansCells
    3. Yin Q, Fan R, Cao X, Liu Q, Jiang R, Zeng W. DeepDrug: A general graph-based deep learning framework for drug-drug interactions and drug-target interactions prediction. Quant Biol. 2023 Sep; 11(3):260-274. PMID: 41675249; PMCID: PMC12807282.
      Citations: 1     
    4. Zhang S, Fan R, Liu Y, Chen S, Liu Q, Zeng W. Applications of transformer-based language models in bioinformatics: a survey. Bioinform Adv. 2023; 3(1):vbad001. PMID: 36845200; PMCID: PMC9950855.
      Citations: 63     
    5. Zeng W, Liu Q, Yin Q, Jiang R, Wong WH. HiChIPdb: a comprehensive database of HiChIP regulatory interactions. Nucleic Acids Res. 2023 Jan 06; 51(D1):D159-D166. PMID: 36215037; PMCID: PMC9825415.
      Citations: 18     Fields:    Translation:Cells
    6. Zeng W, Chen S, Cui X, Chen X, Gao Z, Jiang R. SilencerDB: a comprehensive database of silencers. Nucleic Acids Res. 2021 Jan 08; 49(D1):D221-D228. PMID: 33045745; PMCID: PMC7778955.
      Citations: 30     Fields:    Translation:HumansAnimalsCells
    7. Zeng W, Wang Y, Jiang R. Integrating distal and proximal information to predict gene expression via a densely connected convolutional neural network. Bioinformatics. 2020 Jan 15; 36(2):496-503. PMID: 31318408.
      Citations: 23     Fields:    Translation:Cells
    8. Zeng W, Chen X, Duren Z, Wang Y, Jiang R, Wong WH. DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data. Nat Commun. 2019 Oct 10; 10(1):4613. PMID: 31601804; PMCID: PMC6787340.
      Citations: 41     Fields:    Translation:HumansAnimalsCells
    9. Zeng W, Min X, Jiang R. EnDisease: a manually curated database for enhancer-disease associations. Database (Oxford). 2019 Jan 01; 2019. PMID: 30788500; PMCID: PMC6382991.
      Citations: 13     Fields:    Translation:HumansAnimalsCells
    10. Zeng W, Wu M, Jiang R. Prediction of enhancer-promoter interactions via natural language processing. BMC Genomics. 2018 May 09; 19(Suppl 2):84. PMID: 29764360; PMCID: PMC5954283.
      Citations: 44     Fields:    Translation:HumansCells
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