The University of Chicago Header Logo

Luca Maragliano

Title
InstitutionUniversity of Chicago
AddressChicago IL 60637
vCardDownload vCard

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Furini S, Maragliano L, Masetti M. Editorial: Recent advancements in modeling and simulations of ion channels. Front Mol Biosci. 2022; 9:1098216. PMID: 36483539; PMCID: PMC9723455.
      Citations:    
    2. Moschetta M, Ravasenga T, De Fusco A, Maragliano L, Aprile D, Orlando M, Sacchetti S, Casagrande S, Lignani G, Fassio A, Baldelli P, Benfenati F. Ca2+ binding to synapsin I regulates resting Ca2+ and recovery from synaptic depression in nerve terminals. Cell Mol Life Sci. 2022 Nov 21; 79(12):600. PMID: 36409372; PMCID: PMC9678998.
      Citations:    Fields:    Translation:AnimalsCells
    3. Berselli A, Benfenati F, Maragliano L, Alberini G. Multiscale modelling of claudin-based assemblies: A magnifying glass for novel structures of biological interfaces. Comput Struct Biotechnol J. 2022; 20:5984-6010. PMID: 36382184; PMCID: PMC9647347.
      Citations: 1     
    4. Cottone G, Chiodo L, Maragliano L, Popoff MR, Rasetti-Escargueil C, Lemichez E, Malliavin TE. In Silico Conformational Features of Botulinum Toxins A1 and E1 According to Intraluminal Acidification. Toxins (Basel). 2022 09 17; 14(9). PMID: 36136581; PMCID: PMC9500700.
      Citations:    Fields:    Translation:Cells
    5. Guerrini R, Mei D, Kerti-Szigeti K, Pepe S, Koenig MK, Von Allmen G, Cho MT, McDonald K, Baker J, Bhambhani V, Powis Z, Rodan L, Nabbout R, Barcia G, Rosenfeld JA, Bacino CA, Mignot C, Power LH, Harris CJ, Marjanovic D, M?ller RS, Hammer TB, DDD Study, Keski Filppula R, Vieira P, Hildebrandt C, Sacharow S, Undiagnosed Diseases Network, Maragliano L, Benfenati F, Lachlan K, Benneche A, Petit F, de Sainte Agathe JM, Hallinan B, Si Y, Wentzensen IM, Zou F, Narayanan V, Matsumoto N, Boncristiano A, la Marca G, Kato M, Anderson K, Barba C, Sturiale L, Garozzo D, Bei R, ATP6V1A collaborators, Masuelli L, Conti V, Novarino G, Fassio A. Phenotypic and genetic spectrum of ATP6V1A encephalopathy: a disorder of lysosomal homeostasis. Brain. 2022 08 27; 145(8):2687-2703. PMID: 35675510.
      Citations: 2     Fields:    Translation:HumansCells
    6. Fujisaki H, Suetani H, Maragliano L, Mitsutake A. Non-Markov-Type Analysis and Diffusion Map Analysis for Molecular Dynamics Trajectory of Chignolin at a High Temperature. Life (Basel). 2022 Aug 03; 12(8). PMID: 36013367; PMCID: PMC9410030.
      Citations:    
    7. Berselli A, Alberini G, Benfenati F, Maragliano L. Computational Assessment of Different Structural Models for Claudin-5 Complexes in Blood-Brain Barrier Tight Junctions. ACS Chem Neurosci. 2022 07 20; 13(14):2140-2153. PMID: 35816296; PMCID: PMC9976285.
      Citations: 3     Fields:    Translation:Cells
    8. Berselli A, Alberini G, Benfenati F, Maragliano L. Computational study of ion permeation through claudin-4 paracellular channels. Ann N Y Acad Sci. 2022 10; 1516(1):162-174. PMID: 35811406.
      Citations: 2     Fields:    Translation:HumansCells
    9. Guardiani C, Cecconi F, Chiodo L, Cottone G, Malgaretti P, Maragliano L, Barabash ML, Camisasca G, Ceccarelli M, Corry B, Roth R, Giacomello A, Roux B. Computational methods and theory for ion channel research. Adv Phys X. 2022; 7(1). PMID: 35874965; PMCID: PMC9302924.
      Citations: 1     
    10. Jiang W, Lin YC, Botello-Smith W, Contreras JE, Harris AL, Maragliano L, Luo YL. Free energy and kinetics of cAMP permeation through connexin26 via applied voltage and milestoning. Biophys J. 2021 08 03; 120(15):2969-2983. PMID: 34214529; PMCID: PMC8391066.
      Citations: 1     Fields:    
    11. Alberini G, Benfenati F, Maragliano L. Structural Mechanism of ?-Currents in a Mutated Kv7.2 Voltage Sensor Domain from Molecular Dynamics Simulations. J Chem Inf Model. 2021 03 22; 61(3):1354-1367. PMID: 33570938; PMCID: PMC8023575.
      Citations: 1     Fields:    Translation:HumansCells
    12. Giardino G, Sharapova SO, Ciznar P, Dhalla F, Maragliano L, Radha Rama Devi A, Islamoglu C, Ikinciogullari A, Haskologlu S, Dogu F, Hanna-Wakim R, Dbaibo G, Chou J, Cirillo E, Borzacchiello C, Kreins AY, Worth A, Rota IA, Marques JG, Sayitoglu M, Firtina S, Mahdi M, Geha R, Neven B, Sousa AE, Benfenati F, Hollander GA, Davies EG, Pignata C. Expanding the Nude SCID/CID Phenotype Associated with FOXN1 Homozygous, Compound Heterozygous, or Heterozygous Mutations. J Clin Immunol. 2021 05; 41(4):756-768. PMID: 33464451; PMCID: PMC8068652.
      Citations: 8     Fields:    Translation:HumansCells
    13. Liessi N, Maragliano L, Castagnola V, Bramini M, Benfenati F, Armirotti A. Isobaric Labeling Proteomics Allows a High-Throughput Investigation of Protein Corona Orientation. Anal Chem. 2021 01 19; 93(2):784-791. PMID: 33285070; PMCID: PMC7818227.
      Citations: 3     Fields:    Translation:Cells
    14. Malerba F, Alberini G, Balagura G, Marchese F, Amadori E, Riva A, Vari MS, Gennaro E, Madia F, Salpietro V, Angriman M, Giordano L, Accorsi P, Trivisano M, Specchio N, Russo A, Gobbi G, Raviglione F, Pisano T, Marini C, Mancardi MM, Nobili L, Freri E, Castellotti B, Capovilla G, Coppola A, Verrotti A, Martelli P, Miceli F, Maragliano L, Benfenati F, Cilio MR, Johannesen KM, M?ller RS, Ceulemans B, Minetti C, Weckhuysen S, Zara F, Taglialatela M, Striano P. Genotype-phenotype correlations in patients with de novo KCNQ2 pathogenic variants. Neurol Genet. 2020 Dec; 6(6):e528. PMID: 33659638; PMCID: PMC7803337.
      Citations: 12     
    15. Cottone G, Chiodo L, Maragliano L. Thermodynamics and Kinetics of Ion Permeation in Wild-Type and Mutated Open Active Conformation of the Human a7 Nicotinic Receptor. J Chem Inf Model. 2020 10 26; 60(10):5045-5056. PMID: 32803965; PMCID: PMC8011927.
      Citations: 6     Fields:    Translation:HumansCells
    16. Criscuolo S, Gatti Iou M, Merolla A, Maragliano L, Cesca F, Benfenati F. Engineering REST-Specific Synthetic PUF Proteins to Control Neuronal Gene Expression: A Combined Experimental and Computational Study. ACS Synth Biol. 2020 08 21; 9(8):2039-2054. PMID: 32678979.
      Citations:    Fields:    Translation:HumansAnimalsCells
    17. DiFrancesco ML, Lodola F, Colombo E, Maragliano L, Bramini M, Patern? GM, Baldelli P, Serra MD, Lunelli L, Marchioretto M, Grasselli G, Cim? S, Colella L, Fazzi D, Ortica F, Vurro V, Eleftheriou CG, Shmal D, Maya-Vetencourt JF, Bertarelli C, Lanzani G, Benfenati F. Neuronal firing modulation by a membrane-targeted photoswitch. Nat Nanotechnol. 2020 04; 15(4):296-306. PMID: 32015505.
      Citations: 20     Fields:    Translation:AnimalsCells
    18. Maiole F, Tedeschi G, Candiani S, Maragliano L, Benfenati F, Zullo L. Synapsins are expressed at neuronal and non-neuronal locations in Octopus vulgaris. Sci Rep. 2019 10 28; 9(1):15430. PMID: 31659209; PMCID: PMC6817820.
      Citations:    Fields:    Translation:AnimalsCells
    19. Alberini G, Benfenati F, Maragliano L. Molecular Dynamics Simulations of Ion Selectivity in a Claudin-15 Paracellular Channel. J Phys Chem B. 2018 12 06; 122(48):10783-10792. PMID: 30372067.
      Citations: 16     Fields:    Translation:AnimalsCells
    20. Chiodo L, Malliavin TE, Giuffrida S, Maragliano L, Cottone G. Closed-Locked and Apo-Resting State Structures of the Human a7 Nicotinic Receptor: A Computational Study. J Chem Inf Model. 2018 11 26; 58(11):2278-2293. PMID: 30359518.
      Citations: 6     Fields:    Translation:HumansCells
    21. Fassio A, Esposito A, Kato M, Saitsu H, Mei D, Marini C, Conti V, Nakashima M, Okamoto N, Olmez Turker A, Albuz B, Semerci G?nd?z CN, Yanagihara K, Belmonte E, Maragliano L, Ramsey K, Balak C, Siniard A, Narayanan V, C4RCD Research Group, Ohba C, Shiina M, Ogata K, Matsumoto N, Benfenati F, Guerrini R. De novo mutations of the ATP6V1A gene cause developmental encephalopathy with epilepsy. Brain. 2018 06 01; 141(6):1703-1718. PMID: 29668857; PMCID: PMC5972584.
      Citations: 29     Fields:    Translation:HumansAnimalsCells
    22. Bramini M, Alberini G, Colombo E, Chiacchiaretta M, DiFrancesco ML, Maya-Vetencourt JF, Maragliano L, Benfenati F, Cesca F. Interfacing Graphene-Based Materials With Neural Cells. Front Syst Neurosci. 2018; 12:12. PMID: 29695956; PMCID: PMC5904258.
      Citations: 17     
    23. Paz SA, Maragliano L, Abrams CF. Effect of Intercalated Water on Potassium Ion Transport through Kv1.2 Channels Studied via On-the-Fly Free-Energy Parametrization. J Chem Theory Comput. 2018 May 08; 14(5):2743-2750. PMID: 29570282.
      Citations:    Fields:    Translation:Cells
    24. Rossi P, Sterlini B, Castroflorio E, Marte A, Onofri F, Valtorta F, Maragliano L, Corradi A, Benfenati F. A novel topology of proline-rich transmembrane protein 2 (PRRT2): Hints for an intracellular function at the synapse. J Biol Chem. 2018 03 23; 293(12):4581. PMID: 29572331; PMCID: PMC5868257.
      Citations: 1     Fields:    
    25. Alberini G, Benfenati F, Maragliano L. Correction: A refined model of claudin-15 tight junction paracellular architecture by molecular dynamics simulations. PLoS One. 2018; 13(2):e0193383. PMID: 29462192; PMCID: PMC5819812.
      Citations:    Fields:    
    26. Alberini G, Benfenati F, Maragliano L. A refined model of claudin-15 tight junction paracellular architecture by molecular dynamics simulations. PLoS One. 2017; 12(9):e0184190. PMID: 28863193; PMCID: PMC5581167.
      Citations: 20     Fields:    Translation:HumansCells
    27. Chiodo L, Malliavin TE, Maragliano L, Cottone G. A possible desensitized state conformation of the human a7 nicotinic receptor: A molecular dynamics study. Biophys Chem. 2017 10; 229:99-109. PMID: 28697974.
      Citations: 8     Fields:    Translation:HumansCells
    28. Eleftheriou C, Cesca F, Maragliano L, Benfenati F, Maya-Vetencourt JF. Optogenetic Modulation of Intracellular Signalling and Transcription: Focus on Neuronal Plasticity. J Exp Neurosci. 2017; 11:1179069517703354. PMID: 28579827; PMCID: PMC5415353.
      Citations: 8     
    29. Rossi P, Sterlini B, Castroflorio E, Marte A, Onofri F, Valtorta F, Maragliano L, Corradi A, Benfenati F. A Novel Topology of Proline-rich Transmembrane Protein 2 (PRRT2): HINTS FOR AN INTRACELLULAR FUNCTION AT THE SYNAPSE. J Biol Chem. 2016 Mar 18; 291(12):6111-23. PMID: 26797119; PMCID: PMC4813553.
      Citations: 27     Fields:    Translation:AnimalsCells
    30. Paonessa F, Criscuolo S, Sacchetti S, Amoroso D, Scarongella H, Pecoraro Bisogni F, Carminati E, Pruzzo G, Maragliano L, Cesca F, Benfenati F. Regulation of neural gene transcription by optogenetic inhibition of the RE1-silencing transcription factor. Proc Natl Acad Sci U S A. 2016 Jan 05; 113(1):E91-100. PMID: 26699507; PMCID: PMC4711829.
      Citations: 26     Fields:    Translation:AnimalsCells
    31. Fujisaki H, Moritsugu K, Matsunaga Y, Morishita T, Maragliano L. Extended Phase-Space Methods for Enhanced Sampling in Molecular Simulations: A Review. Front Bioeng Biotechnol. 2015; 3:125. PMID: 26389113; PMCID: PMC4558547.
      Citations: 6     
    32. Chiodo L, Malliavin TE, Maragliano L, Cottone G, Ciccotti G. A Structural Model of the Human a7 Nicotinic Receptor in an Open Conformation. PLoS One. 2015; 10(7):e0133011. PMID: 26208301; PMCID: PMC4514475.
      Citations: 7     Fields:    Translation:HumansCells
    33. Cortes-Ciriano I, Bouvier G, Nilges M, Maragliano L, Malliavin TE. Temperature Accelerated Molecular Dynamics with Soft-Ratcheting Criterion Orients Enhanced Sampling by Low-Resolution Information. J Chem Theory Comput. 2015 Jul 14; 11(7):3446-54. PMID: 26575778.
      Citations: 7     Fields:    Translation:Cells
    34. Orlando M, Lignani G, Maragliano L, Fassio A, Onofri F, Baldelli P, Gioved? S, Benfenati F. Functional role of ATP binding to synapsin I in synaptic vesicle trafficking and release dynamics. J Neurosci. 2014 Oct 29; 34(44):14752-68. PMID: 25355227; PMCID: PMC6608424.
      Citations: 14     Fields:    Translation:AnimalsCells
    35. Fossati SM, Candiani S, N?dl MT, Maragliano L, Pennuto M, Domingues P, Benfenati F, Pestarino M, Zullo L. Identification and Expression of Acetylcholinesterase in Octopus vulgaris Arm Development and Regeneration: a Conserved Role for ACHE? Mol Neurobiol. 2015 Aug; 52(1):45-56. PMID: 25112677.
      Citations: 12     Fields:    Translation:AnimalsCells
    36. Selwa E, Huynh T, Ciccotti G, Maragliano L, Malliavin TE. Temperature-accelerated molecular dynamics gives insights into globular conformations sampled in the free state of the AC catalytic domain. Proteins. 2014 Oct; 82(10):2483-96. PMID: 24863163.
      Citations: 9     Fields:    Translation:Cells
    37. Cafazzo S, Maragliano L, Bonanni R, Scholl F, Guarducci M, Scarcella R, Di Paolo M, Pontier D, Lai O, Carlevaro F, Bucci E, Cerini N, Carlevaro L, Alfieri L, Fantini C, Natoli E. Behavioural and physiological indicators of shelter dogs' welfare: reflections on the no-kill policy on free-ranging dogs in Italy revisited on the basis of 15 years of implementation. Physiol Behav. 2014 Jun 22; 133:223-9. PMID: 24907692.
      Citations: 15     Fields:    Translation:HumansAnimals
    38. Mohammad Hosseini Naveh Z, Malliavin TE, Maragliano L, Cottone G, Ciccotti G. Conformational changes in acetylcholine binding protein investigated by temperature accelerated molecular dynamics. PLoS One. 2014; 9(2):e88555. PMID: 24551117; PMCID: PMC3923797.
      Citations: 10     Fields:    Translation:AnimalsCells
    39. Maragliano L, Roux B, Vanden-Eijnden E. Comparison between Mean Forces and Swarms-of-Trajectories String Methods. J Chem Theory Comput. 2014 Feb 11; 10(2):524-33. PMID: 26580029; PMCID: PMC6980172.
      Citations: 14     Fields:    
    40. Lacroix JJ, Pless SA, Maragliano L, Campos FV, Galpin JD, Ahern CA, Roux B, Bezanilla F. Intermediate state trapping of a voltage sensor. J Gen Physiol. 2012 Dec; 140(6):635-52. PMID: 23183699; PMCID: PMC3514728.
      Citations: 37     Fields:    Translation:AnimalsCells
    41. Gentile F, Moretti M, Limongi T, Falqui A, Bertoni G, Scarpellini A, Santoriello S, Maragliano L, Proietti Zaccaria R, di Fabrizio E. Direct imaging of DNA fibers: the visage of double helix. Nano Lett. 2012 Dec 12; 12(12):6453-8. PMID: 23171353.
      Citations: 15     Fields:    Translation:Cells
    42. Jiang W, Luo Y, Maragliano L, Roux B. Calculation of Free Energy Landscape in Multi-Dimensions with Hamiltonian-Exchange Umbrella Sampling on Petascale Supercomputer. J Chem Theory Comput. 2012 Nov 13; 8(11):4672-80. PMID: 26605623.
      Citations: 40     Fields:    
    43. Vashisth H, Maragliano L, Abrams CF. "DFG-flip" in the insulin receptor kinase is facilitated by a helical intermediate state of the activation loop. Biophys J. 2012 Apr 18; 102(8):1979-87. PMID: 22768955; PMCID: PMC3328698.
      Citations: 26     Fields:    Translation:Cells
    44. Maragliano L, Cottone G, Ciccotti G, Vanden-Eijnden E. Mapping the network of pathways of CO diffusion in myoglobin. J Am Chem Soc. 2010 Jan 27; 132(3):1010-7. PMID: 20039718.
      Citations: 37     Fields:    Translation:Cells
    45. Maragliano L, Vanden-Eijnden E, Roux B. Free energy and kinetics of conformational transitions from Voronoi tessellated milestoning with restraining potentials. J Chem Theory Comput. 2009 Aug 31; 5(10):2589-2594. PMID: 20354583; PMCID: PMC2846710.
      Citations: 23     Fields:    
    46. Maragliano L, Vanden-Eijnden E. Single-sweep methods for free energy calculations. J Chem Phys. 2008 May 14; 128(18):184110. PMID: 18532802.
      Citations: 31     Fields:    Translation:Cells
    47. Maragliano L, Fischer A, Vanden-Eijnden E, Ciccotti G. String method in collective variables: minimum free energy paths and isocommittor surfaces. J Chem Phys. 2006 Jul 14; 125(2):24106. PMID: 16848576.
      Citations: 150     Fields:    
    48. Maragliano L, Falconi M, Sergi A, Cioni P, Castelli S, Lania A, Stroppolo ME, Strambini G, Ferrario M, Desideri A. Experimental and simulative dissociation of dimeric Cu,Zn superoxide dismutase doubly mutated at the intersubunit surface. Biophys J. 2005 Apr; 88(4):2875-82. PMID: 15681652; PMCID: PMC1305382.
      Citations:    Fields:    Translation:Cells
    49. Maragliano L, Cottone G, Cordone L, Ciccotti G. Atomic mean-square displacements in proteins by molecular dynamics: a case for analysis of variance. Biophys J. 2004 May; 86(5):2765-72. PMID: 15111395; PMCID: PMC1304147.
      Citations: 5     Fields:    Translation:Cells
    Maragliano's Networks
    Click the
    Explore
    buttons for more information and interactive visualizations!
    Concepts (208)
    Explore
    _
    Co-Authors (1)
    Explore
    _
    Similar People (60)
    Explore
    _
    Same Department Expand Description
    Explore
    _
    Physical Neighbors
    _