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Luca Maragliano

AddressChicago IL 60637
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Jiang W, Lin YC, Botello-Smith W, Contreras JE, Harris AL, Maragliano L, Luo YL. Free energy and kinetics of cAMP permeation through connexin26 via applied voltage and milestoning. Biophys J. 2021 08 03; 120(15):2969-2983. PMID: 34214529.
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    2. Alberini G, Benfenati F, Maragliano L. Structural Mechanism of ?-Currents in a Mutated Kv7.2 Voltage Sensor Domain from Molecular Dynamics Simulations. J Chem Inf Model. 2021 03 22; 61(3):1354-1367. PMID: 33570938.
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    3. Giardino G, Sharapova SO, Ciznar P, Dhalla F, Maragliano L, Radha Rama Devi A, Islamoglu C, Ikinciogullari A, Haskologlu S, Dogu F, Hanna-Wakim R, Dbaibo G, Chou J, Cirillo E, Borzacchiello C, Kreins AY, Worth A, Rota IA, Marques JG, Sayitoglu M, Firtina S, Mahdi M, Geha R, Neven B, Sousa AE, Benfenati F, Hollander GA, Davies EG, Pignata C. Expanding the Nude SCID/CID Phenotype Associated with FOXN1 Homozygous, Compound Heterozygous, or Heterozygous Mutations. J Clin Immunol. 2021 05; 41(4):756-768. PMID: 33464451.
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    4. Liessi N, Maragliano L, Castagnola V, Bramini M, Benfenati F, Armirotti A. Isobaric Labeling Proteomics Allows a High-Throughput Investigation of Protein Corona Orientation. Anal Chem. 2021 01 19; 93(2):784-791. PMID: 33285070.
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    5. Malerba F, Alberini G, Balagura G, Marchese F, Amadori E, Riva A, Vari MS, Gennaro E, Madia F, Salpietro V, Angriman M, Giordano L, Accorsi P, Trivisano M, Specchio N, Russo A, Gobbi G, Raviglione F, Pisano T, Marini C, Mancardi MM, Nobili L, Freri E, Castellotti B, Capovilla G, Coppola A, Verrotti A, Martelli P, Miceli F, Maragliano L, Benfenati F, Cilio MR, Johannesen KM, Møller RS, Ceulemans B, Minetti C, Weckhuysen S, Zara F, Taglialatela M, Striano P. Genotype-phenotype correlations in patients with de novo KCNQ2 pathogenic variants. Neurol Genet. 2020 Dec; 6(6):e528. PMID: 33659638.
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    6. Cottone G, Chiodo L, Maragliano L. Thermodynamics and Kinetics of Ion Permeation in Wild-Type and Mutated Open Active Conformation of the Human a7 Nicotinic Receptor. J Chem Inf Model. 2020 10 26; 60(10):5045-5056. PMID: 32803965.
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    7. Criscuolo S, Gatti Iou M, Merolla A, Maragliano L, Cesca F, Benfenati F. Engineering REST-Specific Synthetic PUF Proteins to Control Neuronal Gene Expression: A Combined Experimental and Computational Study. ACS Synth Biol. 2020 08 21; 9(8):2039-2054. PMID: 32678979.
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    8. DiFrancesco ML, Lodola F, Colombo E, Maragliano L, Bramini M, Paternò GM, Baldelli P, Serra MD, Lunelli L, Marchioretto M, Grasselli G, Cimò S, Colella L, Fazzi D, Ortica F, Vurro V, Eleftheriou CG, Shmal D, Maya-Vetencourt JF, Bertarelli C, Lanzani G, Benfenati F. Neuronal firing modulation by a membrane-targeted photoswitch. Nat Nanotechnol. 2020 04; 15(4):296-306. PMID: 32015505.
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    9. Maiole F, Tedeschi G, Candiani S, Maragliano L, Benfenati F, Zullo L. Synapsins are expressed at neuronal and non-neuronal locations in Octopus vulgaris. Sci Rep. 2019 10 28; 9(1):15430. PMID: 31659209.
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    10. Alberini G, Benfenati F, Maragliano L. Molecular Dynamics Simulations of Ion Selectivity in a Claudin-15 Paracellular Channel. J Phys Chem B. 2018 12 06; 122(48):10783-10792. PMID: 30372067.
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    11. Chiodo L, Malliavin TE, Giuffrida S, Maragliano L, Cottone G. Closed-Locked and Apo-Resting State Structures of the Human a7 Nicotinic Receptor: A Computational Study. J Chem Inf Model. 2018 11 26; 58(11):2278-2293. PMID: 30359518.
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    12. Fassio A, Esposito A, Kato M, Saitsu H, Mei D, Marini C, Conti V, Nakashima M, Okamoto N, Olmez Turker A, Albuz B, Semerci Gündüz CN, Yanagihara K, Belmonte E, Maragliano L, Ramsey K, Balak C, Siniard A, Narayanan V. De novo mutations of the ATP6V1A gene cause developmental encephalopathy with epilepsy. Brain. 2018 06 01; 141(6):1703-1718. PMID: 29668857.
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    13. Bramini M, Alberini G, Colombo E, Chiacchiaretta M, DiFrancesco ML, Maya-Vetencourt JF, Maragliano L, Benfenati F, Cesca F. Interfacing Graphene-Based Materials With Neural Cells. Front Syst Neurosci. 2018; 12:12. PMID: 29695956.
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    14. Paz SA, Maragliano L, Abrams CF. Effect of Intercalated Water on Potassium Ion Transport through Kv1.2 Channels Studied via On-the-Fly Free-Energy Parametrization. J Chem Theory Comput. 2018 May 08; 14(5):2743-2750. PMID: 29570282.
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    15. Rossi P, Sterlini B, Castroflorio E, Marte A, Onofri F, Valtorta F, Maragliano L, Corradi A, Benfenati F. A novel topology of proline-rich transmembrane protein 2 (PRRT2): Hints for an intracellular function at the synapse. J Biol Chem. 2018 03 23; 293(12):4581. PMID: 29572331.
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    16. Alberini G, Benfenati F, Maragliano L. Correction: A refined model of claudin-15 tight junction paracellular architecture by molecular dynamics simulations. PLoS One. 2018; 13(2):e0193383. PMID: 29462192.
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    17. Alberini G, Benfenati F, Maragliano L. A refined model of claudin-15 tight junction paracellular architecture by molecular dynamics simulations. PLoS One. 2017; 12(9):e0184190. PMID: 28863193.
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    18. Chiodo L, Malliavin TE, Maragliano L, Cottone G. A possible desensitized state conformation of the human a7 nicotinic receptor: A molecular dynamics study. Biophys Chem. 2017 10; 229:99-109. PMID: 28697974.
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    19. Eleftheriou C, Cesca F, Maragliano L, Benfenati F, Maya-Vetencourt JF. Optogenetic Modulation of Intracellular Signalling and Transcription: Focus on Neuronal Plasticity. J Exp Neurosci. 2017; 11:1179069517703354. PMID: 28579827.
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    20. Rossi P, Sterlini B, Castroflorio E, Marte A, Onofri F, Valtorta F, Maragliano L, Corradi A, Benfenati F. A Novel Topology of Proline-rich Transmembrane Protein 2 (PRRT2): HINTS FOR AN INTRACELLULAR FUNCTION AT THE SYNAPSE. J Biol Chem. 2016 Mar 18; 291(12):6111-23. PMID: 26797119.
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    21. Paonessa F, Criscuolo S, Sacchetti S, Amoroso D, Scarongella H, Pecoraro Bisogni F, Carminati E, Pruzzo G, Maragliano L, Cesca F, Benfenati F. Regulation of neural gene transcription by optogenetic inhibition of the RE1-silencing transcription factor. Proc Natl Acad Sci U S A. 2016 Jan 05; 113(1):E91-100. PMID: 26699507.
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    22. Fujisaki H, Moritsugu K, Matsunaga Y, Morishita T, Maragliano L. Extended Phase-Space Methods for Enhanced Sampling in Molecular Simulations: A Review. Front Bioeng Biotechnol. 2015; 3:125. PMID: 26389113.
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    23. Chiodo L, Malliavin TE, Maragliano L, Cottone G, Ciccotti G. A Structural Model of the Human a7 Nicotinic Receptor in an Open Conformation. PLoS One. 2015; 10(7):e0133011. PMID: 26208301.
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    24. Cortes-Ciriano I, Bouvier G, Nilges M, Maragliano L, Malliavin TE. Temperature Accelerated Molecular Dynamics with Soft-Ratcheting Criterion Orients Enhanced Sampling by Low-Resolution Information. J Chem Theory Comput. 2015 Jul 14; 11(7):3446-54. PMID: 26575778.
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    25. Orlando M, Lignani G, Maragliano L, Fassio A, Onofri F, Baldelli P, Giovedí S, Benfenati F. Functional role of ATP binding to synapsin I in synaptic vesicle trafficking and release dynamics. J Neurosci. 2014 Oct 29; 34(44):14752-68. PMID: 25355227.
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    26. Fossati SM, Candiani S, Nödl MT, Maragliano L, Pennuto M, Domingues P, Benfenati F, Pestarino M, Zullo L. Identification and Expression of Acetylcholinesterase in Octopus vulgaris Arm Development and Regeneration: a Conserved Role for ACHE? Mol Neurobiol. 2015 Aug; 52(1):45-56. PMID: 25112677.
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    27. Selwa E, Huynh T, Ciccotti G, Maragliano L, Malliavin TE. Temperature-accelerated molecular dynamics gives insights into globular conformations sampled in the free state of the AC catalytic domain. Proteins. 2014 Oct; 82(10):2483-96. PMID: 24863163.
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    28. Cafazzo S, Maragliano L, Bonanni R, Scholl F, Guarducci M, Scarcella R, Di Paolo M, Pontier D, Lai O, Carlevaro F, Bucci E, Cerini N, Carlevaro L, Alfieri L, Fantini C, Natoli E. Behavioural and physiological indicators of shelter dogs' welfare: reflections on the no-kill policy on free-ranging dogs in Italy revisited on the basis of 15 years of implementation. Physiol Behav. 2014 Jun 22; 133:223-9. PMID: 24907692.
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    29. Mohammad Hosseini Naveh Z, Malliavin TE, Maragliano L, Cottone G, Ciccotti G. Conformational changes in acetylcholine binding protein investigated by temperature accelerated molecular dynamics. PLoS One. 2014; 9(2):e88555. PMID: 24551117.
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    30. Maragliano L, Roux B, Vanden-Eijnden E. Comparison between Mean Forces and Swarms-of-Trajectories String Methods. J Chem Theory Comput. 2014 Feb 11; 10(2):524-33. PMID: 26580029.
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    31. Lacroix JJ, Pless SA, Maragliano L, Campos FV, Galpin JD, Ahern CA, Roux B, Bezanilla F. Intermediate state trapping of a voltage sensor. J Gen Physiol. 2012 Dec; 140(6):635-52. PMID: 23183699.
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    32. Gentile F, Moretti M, Limongi T, Falqui A, Bertoni G, Scarpellini A, Santoriello S, Maragliano L, Proietti Zaccaria R, di Fabrizio E. Direct imaging of DNA fibers: the visage of double helix. . 2012 Dec 12; 12(12):6453-8. PMID: 23171353.
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    33. Jiang W, Luo Y, Maragliano L, Roux B. Calculation of Free Energy Landscape in Multi-Dimensions with Hamiltonian-Exchange Umbrella Sampling on Petascale Supercomputer. J Chem Theory Comput. 2012 Nov 13; 8(11):4672-80. PMID: 26605623.
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    34. Vashisth H, Maragliano L, Abrams CF. "DFG-flip" in the insulin receptor kinase is facilitated by a helical intermediate state of the activation loop. Biophys J. 2012 Apr 18; 102(8):1979-87. PMID: 22768955.
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    35. Maragliano L, Cottone G, Ciccotti G, Vanden-Eijnden E. Mapping the network of pathways of CO diffusion in myoglobin. J Am Chem Soc. 2010 Jan 27; 132(3):1010-7. PMID: 20039718.
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    36. Maragliano L, Vanden-Eijnden E, Roux B. Free energy and kinetics of conformational transitions from Voronoi tessellated milestoning with restraining potentials. J Chem Theory Comput. 2009 Aug 31; 5(10):2589-2594. PMID: 20354583.
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    37. Maragliano L, Vanden-Eijnden E. Single-sweep methods for free energy calculations. J Chem Phys. 2008 May 14; 128(18):184110. PMID: 18532802.
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    38. Maragliano L, Fischer A, Vanden-Eijnden E, Ciccotti G. String method in collective variables: minimum free energy paths and isocommittor surfaces. J Chem Phys. 2006 Jul 14; 125(2):24106. PMID: 16848576.
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    39. Maragliano L, Falconi M, Sergi A, Cioni P, Castelli S, Lania A, Stroppolo ME, Strambini G, Ferrario M, Desideri A. Experimental and simulative dissociation of dimeric Cu,Zn superoxide dismutase doubly mutated at the intersubunit surface. Biophys J. 2005 Apr; 88(4):2875-82. PMID: 15681652.
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    40. Maragliano L, Cottone G, Cordone L, Ciccotti G. Atomic mean-square displacements in proteins by molecular dynamics: a case for analysis of variance. Biophys J. 2004 May; 86(5):2765-72. PMID: 15111395.
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